0.3.0

• Adds option --aligner-args, allowing arbitrary alignment parameter passthrough (e.g. --aligner-args="--ignore-quals").
• Adds option --sort-by-name, ordering output reads by name. This ensures that output order is deterministic when using Bowtie2 with multiple threads. Bowtie2's --reorder flag also provides determinism with less overhead on Linux, but has severe performance implications under MacOS in my testing. You can pass --reorder to Bowtie2 using --aligner-args="--reorder").