Merge branch 'master' of github.com:powellgenomicslab/Nebulosa

beigelk · Feb 11, 2023 · a9d81a2 · a9d81a2
2 parents ac8c2e9 + b834a75
commit a9d81a2
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Showing 3 changed files with 6 additions and 7 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -21,7 +21,6 @@ Depends:
     ggplot2,
     patchwork
 Imports:
-    Seurat,
     SingleCellExperiment,
     SummarizedExperiment,
     ks,
@@ -33,7 +32,7 @@ RoxygenNote: 7.2.3
 VignetteBuilder: knitr
 Suggests: 
     testthat, BiocStyle, knitr, rmarkdown, covr, scater, scran, DropletUtils,
-    igraph, BiocFileCache
+    igraph, BiocFileCache, Seurat
 biocViews: 
     Software, GeneExpression, SingleCell, Visualization, 
     DimensionReduction
diff --git a/NAMESPACE b/NAMESPACE
@@ -4,10 +4,10 @@ export(plot_density)
 exportMethods(plot_density)
 importFrom(Matrix,Matrix)
 importFrom(Matrix,t)
-importFrom(Seurat,Embeddings)
-importFrom(Seurat,FetchData)
-importFrom(Seurat,GetAssayData)
-importFrom(Seurat,Reductions)
+importFrom(SeuratObject,Embeddings)
+importFrom(SeuratObject,FetchData)
+importFrom(SeuratObject,GetAssayData)
+importFrom(SeuratObject,Reductions)
 importFrom(SingleCellExperiment,colData)
 importFrom(SingleCellExperiment,reducedDim)
 importFrom(SingleCellExperiment,reducedDims)

diff --git a/R/methods.R b/R/methods.R
@@ -53,7 +53,7 @@ setGeneric("plot_density", function(object, features, slot = NULL,
                                     ...)
     standardGeneric("plot_density"))
 
-#' @importFrom Seurat GetAssayData Reductions Embeddings FetchData
+#' @importFrom SeuratObject GetAssayData Reductions Embeddings FetchData
 #' @export
 #' @describeIn plot_density Plot gene-weighted 2D kernel density
 setMethod("plot_density", signature("Seurat"),