Update import merge tool

.github/workflows/check-reproducibility.yml

@@ -36,10 +36,9 @@ jobs:
       run: make clean
     - run: echo "LOGURU_COLORIZE=NO" >> $GITHUB_ENV
     - name: Build
-      run: cd src/scripts/merge_tools/merging && ./gradlew -q shadowJar
+      run: cd src/scripts/merge_tools/merging && ./gradlew shadowJar
     - name: make check-merges-reproducibility
       run: |
-        python3 src/python/replay_merge.py --merges_csv results/combined/result.csv -delete_workdir --idx 38-192
         head -n 151 results/combined/result.csv > temp.csv && mv temp.csv results/combined/result.csv
         make check-merges-reproducibility
       env:

.gitmodules

@@ -1,4 +1,5 @@
 [submodule "src/scripts/merge_tools/merging"]
 	path = src/scripts/merge_tools/merging
 	url = https://github.com/plume-lib/merging.git
+	pushurl = [email protected]:plume-lib/merging.git
 	ignore = dirty

Makefile

@@ -139,9 +139,11 @@ clean-local:
 	rm -rf repos
 
 check-merges-reproducibility:
-	@echo "Running replay_merge for each idx in parallel using GNU Parallel..."
+	@echo "Running replay_merge sequentially for each idx..."
 	@set -e; \
-	tail -n +2 $(CSV_RESULTS) | awk -F, '{print $$1}' | parallel --halt now,fail=1 -j 50% python3 src/python/replay_merge.py --testing --merges_csv $(CSV_RESULTS) -skip_build -delete_workdir --idx {}
+	for idx in $(shell tail -n +2 $(CSV_RESULTS) | awk -F, '{print $$1}'); do \
+		src/python/replay_merge.py --testing --merges_csv $(CSV_RESULTS) -skip_build -delete_workdir --idx $$idx; \
+	done
 
 protect-repos:
 	find repos -mindepth 1 -type d -exec chmod a-w {} +

README.md

@@ -85,7 +85,7 @@ To run the stack on all repos:
 ./run_full.sh
 ```
 
-To run the stack on all repos and also diff the merges outputs:
+To run the stack on all repos and also diff the merges' outputs:
 
 ```bash
 ./run_full.sh -d
@@ -217,4 +217,4 @@ To investigate differences between two mergers:
 
 * edit file `src/python/select_from_results.py` to reflect the differences you are interested in.
 * run `src/python/select_from_results.py` to create a .csv database containing only the differences.
-* run `src/python/replay_merge.py --merges_csv CSV_FILE --idx INDEX` (maybe add `-test`) for the index of the merge you are interested in.
+* run `src/python/replay_merge.py --idx INDEX` (maybe add `-test`) for the index of the merge you are interested in.

results/combined/merges_tested/47deg/firebrand.csv

@@ -1,4 +1,4 @@
-idx,branch_name,merge,left,right,notes,test merge,diff contains java file,left_tree_fingerprint,left parent test result,right_tree_fingerprint,right parent test result,parents pass,sampled for testing,gitmerge_ort,gitmerge_ort_merge_fingerprint,gitmerge_ort_ignorespace,gitmerge_ort_ignorespace_merge_fingerprint,gitmerge_recursive_histogram,gitmerge_recursive_histogram_merge_fingerprint,gitmerge_recursive_ignorespace,gitmerge_recursive_ignorespace_merge_fingerprint,gitmerge_recursive_minimal,gitmerge_recursive_minimal_merge_fingerprint,gitmerge_recursive_myers,gitmerge_recursive_myers_merge_fingerprint,gitmerge_recursive_patience,gitmerge_recursive_patience_merge_fingerprint,gitmerge_resolve,gitmerge_resolve_merge_fingerprint,gitmerge_ort_adjacent,gitmerge_ort_adjacent_merge_fingerprint,gitmerge_ort_imports,gitmerge_ort_imports_merge_fingerprint,gitmerge_ort_imports_ignorespace,gitmerge_ort_imports_ignorespace_merge_fingerprint,git_hires_merge,git_hires_merge_merge_fingerprint,spork,spork_merge_fingerprint,intellimerge,intellimerge_merge_fingerprint
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+idx,branch_name,merge,left,right,notes,test merge,diff contains java file,left_tree_fingerprint,left parent test result,right_tree_fingerprint,right parent test result,parents pass,sampled for testing,gitmerge_ort,gitmerge_ort_merge_fingerprint,gitmerge_ort_ignorespace,gitmerge_ort_ignorespace_merge_fingerprint,gitmerge_recursive_histogram,gitmerge_recursive_histogram_merge_fingerprint,gitmerge_recursive_ignorespace,gitmerge_recursive_ignorespace_merge_fingerprint,gitmerge_recursive_minimal,gitmerge_recursive_minimal_merge_fingerprint,gitmerge_recursive_myers,gitmerge_recursive_myers_merge_fingerprint,gitmerge_recursive_patience,gitmerge_recursive_patience_merge_fingerprint,gitmerge_resolve,gitmerge_resolve_merge_fingerprint,git_hires_merge,git_hires_merge_merge_fingerprint,spork,spork_merge_fingerprint,intellimerge,intellimerge_merge_fingerprint,plumelib_ort,plumelib_ort_merge_fingerprint,plumelib_ort_ignorespace,plumelib_ort_ignorespace_merge_fingerprint,plumelib_ort_adjacent,plumelib_ort_adjacent_merge_fingerprint,plumelib_ort_adjacent_ignorespace,plumelib_ort_adjacent_ignorespace_merge_fingerprint,plumelib_ort_imports,plumelib_ort_imports_merge_fingerprint,plumelib_ort_imports_ignorespace,plumelib_ort_imports_ignorespace_merge_fingerprint,plumelib_ort_version_number,plumelib_ort_version_number_merge_fingerprint,plumelib_ort_version_number_ignorespace,plumelib_ort_version_number_ignorespace_merge_fingerprint
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results/combined/merges_tested/9apps/elasticsearch-cloudwatch.csv

@@ -1,2 +1,2 @@
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+2,refs/heads/master,8e72563c34b534951407fc553222e2d2b2536b0a,21d45d6b78e3e7c6f749cd7a8dd64897cc34a0d4,5e338acd3c7d8fab4361594dfc084ad2a89f31eb,,8a1c1183895492fa26e72e027ade5ffda13b00ae025bee8bc8ef0773c8125d4b,Tests_passed,6346c5a5c40e39265013e7eba7b2e41781f1a17fe78679fdc734e4e48a403ff6,Tests_passed,True,True,True,True,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,ab987682137551e396c32439051d9f6a1bbafa70346840447d9fd964ee150b80,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02,Tests_passed,6a4a593297d55760b59fd05d342298f2ba803939c4b3a8448670ba5e2905fc02