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[ENH] implement bids-schema - part 1#124

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Remi-Gau merged 54 commits intobids-standard:devbids-standard/bids-matlab:devfrom Remi-Gau:remi-implement_schemaRemi-Gau/bids-matlab:remi-implement_schemaCopy head branch name to clipboardFeb 15, 2021

+1,742-1,257

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Commits on Feb 15, 2021

• create test for load_schema

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• add function to load schema

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• fix conflict

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• update load_schema test

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• add functions to deal with schema extensions, suffixes and entities

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• add function to return regular expression for a certain data type

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• update return_datatype_entities to new schema structure

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• move schema functions

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• update tests to moxunit format

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• add test for parse_filename

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• use schema to parse anat

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• linting, cleaning, use valid bids example for parse_filename

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• use schema to parse behavioral and refactor

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• parse ASL with schema

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• parse dwi using schema

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• linting

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• parse func with schema

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• fix issue of regexp on Octave

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• prepare for rebase

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• handle asl file parsing with schema

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• refactor asl manage m0scan, json, context, labelling

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• refactor managing intended_for for ASL

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• pass schema as argument instead of reloading it

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• refactor handling of loading of metadata in layout

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• refactor fmap parsing to use schema

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• parse ieeg with schema

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• use schema to parse eeg

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• parse meg with schema and refactor

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• reorganize tests and make list of target files to parse for meeg more general

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• add test dwi

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• make file listing most general for all modalities

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• make sure .pos files and meg.ds folders are parsed

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• refactor and linting

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• refactor layout to manage most of the parsing through the same subfunction

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• rename function and variables

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• rename function

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• refactor query

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• allow schemaless parsing and test on derivatives

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• refactor schema handling

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• refactor description light validation

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• start implementing querying for dependencies

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• fix CI

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• increase depth fetch (in the hope that codecov will be happy)

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• upload CI coverage

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• move all entities to sub-structure

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• rename keep file function

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• remove parse_pet

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• small refactoring

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• refactor matching structure content

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• Attempt to fix CI failures

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• fix assert in test

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• update tests and lint

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• update test to new schema

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• update test for parsing and querying derivatives

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