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* Updates to czi_drsm dataset * Updates to czi_drsm dataset * Running all tests * Updating documentation
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--- | ||
language: | ||
- en | ||
bigbio_language: | ||
- English | ||
license: Creative Commons Zero v1.0 Universal | ||
bigbio_license_shortname: cc0-1.0 | ||
multilinguality: monolingual | ||
pretty_name: CZI DRSM | ||
homepage: https://github.com/chanzuckerberg/DRSM-corpus | ||
bigbio_pubmed: false | ||
bigbio_public: true | ||
bigbio_tasks: | ||
- TXTCLASS | ||
--- | ||
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# Dataset Card for CZI DRSM | ||
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## Dataset Description | ||
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- **Homepage:** https://github.com/chanzuckerberg/DRSM-corpus | ||
- **Pubmed:** False | ||
- **Public:** True | ||
- **Tasks:** TXTCLASS | ||
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Research Article document classification dataset based on aspects of disease research. Currently, the dataset consists of three subsets: | ||
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(A) classifies title/abstracts of papers into most popular subtypes of clinical, basic, and translational papers (~20k papers); | ||
- Clinical Characteristics, Disease Pathology, and Diagnosis - | ||
Text that describes (A) symptoms, signs, or ‘phenotype’ of a disease; | ||
(B) the effects of the disease on patient organs, tissues, or cells; | ||
(C) the results of clinical tests that reveal pathology (including | ||
biomarkers); (D) research that use this information to figure out | ||
a diagnosis. | ||
- Therapeutics in the clinic - | ||
Text describing how treatments work in the clinic (but not in a clinical trial). | ||
- Disease mechanism - | ||
Text that describes either (A) mechanistic involvement of specific genes in disease | ||
(deletions, gain of function, etc); (B) how molecular signalling or metabolism | ||
binding, activating, phosphorylation, concentration increase, etc.) | ||
are involved in the mechanism of a disease; or (C) the physiological | ||
mechanism of disease at the level of tissues, organs, and body systems. | ||
- Patient-Based Therapeutics - | ||
Text describing (A) Clinical trials (studies of therapeutic measures being | ||
used on patients in a clinical trial); (B) Post Marketing Drug Surveillance | ||
(effects of a drug after approval in the general population or as part of | ||
‘standard healthcare’); (C) Drug repurposing (how a drug that has been | ||
approved for one use is being applied to a new disease). | ||
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(B) identifies whether a title/abstract of a paper describes substantive research into Quality of Life (~10k papers); | ||
- -1 - the paper is not a primary experimental study in rare disease | ||
- 0 - the study does not directly investigate quality of life | ||
- 1 - the study investigates qol but not as its primary contribution | ||
- 2 - the study's primary contribution centers on quality of life measures | ||
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(C) identifies if a paper is a natural history study (~10k papers). | ||
- -1 - the paper is not a primary experimental study in rare disease | ||
- 0 - the study is not directly investigating the natural history of a disease | ||
- 1 - the study includes some elements a natural history but not as its primary contribution | ||
- 2 - the study's primary contribution centers on observing the time course of a rare disease | ||
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These classifications are particularly relevant in rare disease research, a field that is generally understudied. | ||
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## Citation Information | ||
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``` | ||
# N/A | ||
``` |
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