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Plant genome assembly and annotation pipeline using snakemake

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Snakemake workflow: plant genome HiFi assembly and genome annotation

This Snakemake pipeline aims for plant genome assembly with HiFi data and genome annotation with RNA-Seq/IsoSeq.

Assembly

Modified from the VGP assembly VGP tutorial

Assembly

Annotation

Annotation

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Plant genome assembly and annotation pipeline using snakemake

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  • Python 97.0%
  • Shell 3.0%