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Replace /bin/sh with a wrapper to /bin/bash #126

Replace /bin/sh with a wrapper to /bin/bash

Replace /bin/sh with a wrapper to /bin/bash #126

name: 'Build & Push: base-glibc-busybox-bash'
on:
push:
branches:
- main
paths:
- images/base-glibc-busybox-bash/*
- .github/workflows/base-glibc-busybox-bash.yaml
pull_request:
paths:
- images/base-glibc-busybox-bash/*
- .github/workflows/base-glibc-busybox-bash.yaml
jobs:
build:
name: Build & Push
runs-on: ubuntu-22.04
env:
# The base image is not intended to change often and should be used with
# version tags or checksum IDs, but not via "latest".
MAJOR_VERSION: 3
MINOR_VERSION: 1
IMAGE_NAME: base-glibc-busybox-bash
BUSYBOX_VERSION: '1.36.1'
DEBIAN_VERSION: '12.2'
steps:
- uses: actions/checkout@v4
- name: Set up QEMU
uses: docker/setup-qemu-action@v2
with:
platforms: arm64
- name: Build
id: build
run: |
set -xeu
cd 'images/${{ env.IMAGE_NAME }}'
image_name='${{ env.IMAGE_NAME }}'
tags='
${{ env.MAJOR_VERSION }}
${{ env.MAJOR_VERSION }}.${{ env.MINOR_VERSION }}
latest
'
printf %s\\n \
"image=${image_name}" \
"tags=$( echo ${tags} )" \
>> $GITHUB_OUTPUT
for tag in ${tags} ; do
buildah manifest create "${image_name}:${tag}"
done
iidfile="$( mktemp )"
buildah bud \
--iidfile="${iidfile}" \
--build-arg=busybox_version='${{ env.BUSYBOX_VERSION }}' \
--file=Dockerfile.busybox
busybox_image="$( cat "${iidfile}" )"
rm "${iidfile}"
for arch in amd64 arm64 ; do
iidfile="$( mktemp )"
buildah bud \
--arch="${arch}" \
--iidfile="${iidfile}" \
--build-arg=busybox_image="${busybox_image}" \
--build-arg=debian_version='${{ env.DEBIAN_VERSION }}'
image_id="$( cat "${iidfile}" )"
rm "${iidfile}"
container="$( buildah from "${image_id}" )"
run() { buildah run "${container}" "${@}" ; }
deb_list="$( run cat /.deb.lst | tr '\n' '|' | sed 's/|$//' )"
pkg_list="$( run cat /.pkg.lst | tr '\n' '|' | sed 's/|$//' )"
glibc="$( run sh -c 'exec "$( find -xdev -name libc.so.6 -print -quit )"' | sed '1!d' )"
busybox="$( run busybox | sed '1!d' )"
bash="$( run bash --version | sed '1!d' )"
buildah rm "${container}"
container="$( buildah from "${image_id}" )"
buildah config \
--label=glibc="${glibc}" \
--label=busybox="${busybox}" \
--label=bash="${bash}" \
--label=deb-list="${deb_list}" \
--label=pkg-list="${pkg_list}" \
"${container}"
image_id="$( buildah commit "${container}" )"
buildah rm "${container}"
for tag in ${tags} ; do
buildah tag \
"${image_id}" \
"${image_name}:${tag}-${arch}"
buildah manifest add \
"${image_name}:${tag}" \
"${image_id}"
done
done
- name: Test
run: |
image='${{ steps.build.outputs.image }}'
ids="$(
for tag in ${{ steps.build.outputs.tags }} ; do
buildah manifest inspect "${image}:${tag}" \
| jq -r '.manifests[]|.digest' \
| while read id ; do
buildah images --format '{{.ID}}{{.Digest}}' \
| sed -n "s/${id}//p"
done
done
)"
ids="$( printf %s "${ids}" | sort -u )"
for id in ${ids} ; do
podman history "${id}"
buildah bud \
--build-arg=base="${id}" \
--file=Dockerfile.test \
"images/${image}"
done
buildah rmi --prune || true
- name: Check Tags
run: |
# FIX upstream: Quay.io does not support immutable images currently.
# => Try to use the REST API to check for duplicate tags.
response="$(
curl -sL \
'https://quay.io/api/v1/repository/bioconda/${{ steps.build.outputs.image }}/tag/'
)"
existing_tags="$(
printf %s "${response}" \
| jq -r '.tags[]|select(.end_ts == null or .end_ts >= now)|.name'
)" \
|| {
printf %s\\n \
'Could not get list of image tags.' \
'Does the repository exist on Quay.io?' \
'Quay.io REST API response was:' \
"${response}"
exit 1
}
for tag in ${{ steps.build.outputs.tags }} ; do
case "${tag}" in
latest | '${{ env.MAJOR_VERSION }}' ) ;;
* )
if printf %s "${existing_tags}" | grep -qxF "${tag}" ; then
printf 'Tag %s already exists!\n' "${tag}"
exit 1
fi
esac
done
- if: ${{ github.ref == 'refs/heads/main' }}
name: Push
uses: redhat-actions/push-to-registry@v2
with:
image: ${{ steps.build.outputs.image }}
tags: ${{ steps.build.outputs.tags }}
registry: ${{ secrets.QUAY_BIOCONDA_REPO }}
username: ${{ secrets.QUAY_BIOCONDA_USERNAME }}
password: ${{ secrets.QUAY_BIOCONDA_TOKEN }}
- if: ${{ github.ref == 'refs/heads/main' }}
name: Test Pushed
run: |
image='${{ env.IMAGE_NAME }}'
ids="$(
for tag in ${{ steps.build.outputs.tags }} ; do
buildah manifest inspect "${image}:${tag}" \
| jq -r '.manifests[]|.digest' \
| while read id ; do
buildah images --format '{{.ID}}{{.Digest}}' \
| sed -n "s/${id}//p"
done
done
)"
ids="$( printf %s "${ids}" | sort -u )"
for id in ${ids} ; do
podman history "${id}"
buildah bud \
--build-arg=base="${id}" \
--file=Dockerfile.test \
"images/${image}"
done
buildah rmi --prune || true