Rename "handyreadgenotyper" to "amplicontyper" (#52897)

* This package allows to genotype and detect AMR mutation in ONT sequenced amplicons.
Current use cases are Salmonella Typhi and Salmonella Paratyphi

* Rename of handyreadgenotyper to amplicotyper

* Remove setuptools from the `build` requirements

---------

Co-authored-by: Martin Grigorov <[email protected]>

recipes/handyreadgenotyper/meta.yaml → recipes/amplicontyper/meta.yaml

@@ -1,26 +1,28 @@
-{% set name = "HandyReadGenotyper" %}
-{% set version = "0.1.24" %}
+{% set name = "AmpliconTyper" %}
+{% set version = "0.1.27" %}
 
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 source:
-  url: https://github.com/AntonS-bio/HandyReadGenotyper/archive/{{ version }}.tar.gz
-  sha256: 11970c9bff8b4b7569e7a124030ccc9a0c53a70bb55fe49fcda735857781a731
+  url: https://github.com/AntonS-bio/AmpliconTyper/archive/{{ version }}.tar.gz
+  sha256: e25b71eca63e62c56baffa0a447872aa48b1327ece16e6463ed3527d5389928a
 
 build:
   noarch: python
   script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
   run_exports:
-      - {{ pin_subpackage('handyreadgenotyper', max_pin="x.x") }}  
+      - {{ pin_subpackage('amplicontyper', max_pin="x.x") }}  
   number: 0
 
 requirements:
   host:
     - pip
     - python >=3.10
+    - setuptools
   run:
+    - setuptools
     - python >=3.10
     - pandas >=2.0.0
     - scikit-learn >=1.3.*
@@ -29,23 +31,23 @@ requirements:
     - tqdm >=4.66.*
     - biopython >=1.78
     - minimap2
+    - requests
     - samtools
 
 test:
   commands:
     - train -h
-    - classify -h
   requires:
     - pip
 
 about:
   license: GPL-3.0-only
   license_file: LICENSE
-  home: https://github.com/AntonS-bio/HandyReadGenotyper
+  home: https://github.com/AntonS-bio/AmpliconTyper
   summary: 'Tool for training model and classifying reads from environmental ONT amplicon sequencing.'
   description: |
     Tool for training model and classifying reads from environmental ONT amplicon sequencing. 
-  doc_source_url: https://github.com/AntonS-bio/HandyAmpliconTool/blob/main/README.md
+  doc_source_url: https://github.com/AntonS-bio/AmpliconTyper/blob/main/README.md
 
 
 extra: