Try original conda recipe

bioconda · Jan 20, 2025 · c0eb9dd · c0eb9dd
1 parent be2a098
commit c0eb9dd
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Showing 4 changed files with 44 additions and 132 deletions.
diff --git a/recipes/muset/build.sh b/recipes/muset/build.sh
@@ -1,19 +1,22 @@
 #!/bin/bash
-set -ex
+set -e
+set -x
 
-# Create build directory
-mkdir -p build && cd build
+mkdir -p ${PREFIX}/bin
 
-# CMake configuration
-cmake .. \
-    -DCMAKE_INSTALL_PREFIX=$PREFIX \
-    -DCONDA_BUILD=ON \
-    -DCMAKE_BUILD_TYPE=Release \
-    -DCMAKE_CXX_STANDARD=17 \
-    -DARCH_NATIVE=OFF
+mkdir build-conda
+cd build-conda
 
-# Build with parallel compilation
-make -j4
+echo "Current directory: ${PWD}"
+ls -lh
 
-# Install
-make install
+cmake .. -DCONDA_BUILD=ON
+make -j8
+cd ..
+
+echo "Current directory: ${PWD}"
+ls -lh
+
+cp ./bin/kmat_tools ${PREFIX}/bin
+cp ./bin/muset ${PREFIX}/bin
+cp ./bin/muset_pa ${PREFIX}/bin
diff --git a/recipes/muset/conda_build_config.yaml b/recipes/muset/conda_build_config.yaml
@@ -1,4 +1,12 @@
+c_compiler:
+  - gcc                        # [linux]
+  - clang                      # [osx]
+c_compiler_version:            # [unix]
+  - 12                         # [linux]
+  - 16                         # [osx]
 cxx_compiler:
-  - gxx
-cxx_compiler_version:
-  - 7.3
+  - gxx                        # [linux]
+  - clangxx                    # [osx]
+cxx_compiler_version:          # [unix]
+  - 12                         # [linux]
+  - 16                         # [osx]
diff --git a/recipes/muset/external_projects.patch b/recipes/muset/external_projects.patch
diff --git a/recipes/muset/meta.yaml b/recipes/muset/meta.yaml
@@ -1,39 +1,40 @@
-{% set name = "muset" %}
 {% set version = "0.5.1" %}
 
 package:
-  name: {{ name|lower }}
+  name: muset
   version: {{ version }}
 
 source:
-  url: https://github.com/camiladuitama/muset/archive/v{{ version }}.tar.gz
+  url: https://github.com/CamilaDuitama/muset/archive/v{{ version }}.tar.gz
   sha256: 0f924e44e2af25397147e40934e024180a8b65c715750f2e9aacdb72fedeb600
   recursive: True
-  patches:
-    - external_projects.patch
+
 build:
-  number: 0
+  number: 1
   skip: True  # [not linux]
-  run_exports:
-    - {{ pin_subpackage('muset', max_pin="x.x") }}
 
 requirements:
   build:
     - {{ compiler('cxx') }}
     - cmake >=3.15
     - make
+
+  host:
+    - zlib
+
+  run:
+    - bioconda::ggcat >=1.1.0
+    - zlib
+
 test:
   commands:
     - muset --help
 
 about:
-  home: https://github.com/camiladuitama/muset
-  license: AGPL-3.0
-  license_file: LICENSE
-  summary: 'A pipeline for building an abundance unitig matrix from a list of FASTA/FASTQ files'
-  description: |
-    MUSET is a software for generating an abundance unitig matrix from a collection 
-    of input samples (in FASTA/Q format).
+  home: "https://github.com/CamilaDuitama/muset"
+  license: MIT
+  description: "A pipeline for building an abundance unitig matrix from a list of FASTA/FASTQ files."
+  dev_url: "https://github.com/CamilaDuitama/muset"
 
 extra:
   recipe-maintainers: