Add a recipe for PopIns2

Signed-off-by: Martin Tzvetanov Grigorov <[email protected]>

recipes/popins2/build.sh

@@ -0,0 +1,15 @@
+#!/usr/bin/env bash
+
+set -xe
+
+# no need to build SeqAn's documentation/demos
+rm -rf external/seqan-library-2.2.0/share/doc/seqan/
+
+export DATE=$(date -u "+%Y-%m-%d %H:%M:%S")
+export VERSION="0.13.0"
+export CXXFLAGS="${CXXFLAGS} -std=c++14"
+
+make -e -j"${CPU_COUNT}"
+
+mkdir -p ${PREFIX}/bin
+install -m 755 popins2 ${PREFIX}/bin

recipes/popins2/meta.yaml

@@ -0,0 +1,44 @@
+{% set name = "popins2" %}
+{% set version = "0.13.0" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin='x.x') }}
+
+source:
+  url: https://github.com/kehrlab/PopIns2/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: f1b79b988a4a29be6e23028e2f8fe1ce913580b37c00fb3988437cf3a19f98fd
+
+requirements:
+  build:
+    - make
+    - {{ compiler('cxx') }}
+  host:
+    - bifrost
+    - bwa
+    - htslib
+    - samtools
+    - sickle-trim
+    - zlib
+
+test:
+  commands:
+    - ls -la # temporary
+
+about:
+  home: https://github.com/kehrlab/PopIns2
+  license: GPL-2.0-only
+  license_family: GPL
+  license_file: LICENSE
+  summary: Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
+  doc_url: https://github.com/kehrlab/PopIns2
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64