Update core-snp-filter to 0.2.0 #52219
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📝 WalkthroughWalkthroughThe pull request introduces modifications to the Possibly related PRs
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Actionable comments posted: 0
🧹 Outside diff range and nitpick comments (1)
recipes/core-snp-filter/meta.yaml (1)
Line range hint
1-40: Overall package update looks goodThe update to core-snp-filter 0.2.0 includes several improvements:
- Proper version bump with reset build number
- Better compiler specification
- Added run_exports for improved ABI compatibility
The changes follow bioconda best practices and include appropriate updates to all required fields.
Consider adding a
test.requiressection if there are any runtime dependencies needed specifically for testing.🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
📜 Review details
Configuration used: CodeRabbit UI
Review profile: CHILL
📒 Files selected for processing (2)
recipes/core-snp-filter/build.sh(0 hunks)recipes/core-snp-filter/meta.yaml(1 hunks)
💤 Files with no reviewable changes (1)
- recipes/core-snp-filter/build.sh
🧰 Additional context used
🪛 yamllint
recipes/core-snp-filter/meta.yaml
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
🔇 Additional comments (4)
recipes/core-snp-filter/meta.yaml (4)
12-14: LGTM! Good improvements to package compatibility
The changes look good:
- Build number correctly reset to 0 for the new version
- Addition of run_exports with appropriate pinning will help maintain ABI compatibility
20-20: LGTM! Better compiler specification
The change from rust >=1.39 to {{ compiler('rust') }} is an improvement as it:
- Follows conda-forge/bioconda best practices
- Provides better build-time compiler handling
1-1: Verify upstream version tag existence
The version bump from 0.1.1 to 0.2.0 indicates new features. Let's verify the tag exists in the upstream repository.
✅ Verification successful
Version 0.2.0 is correctly tagged in upstream repository
The version bump from 0.1.1 to 0.2.0 is valid. The tag v0.2.0 exists in the upstream repository (rrwick/Core-SNP-filter) and is the latest release tag, following the previous versions v0.1.1 and v0.1.0.
🏁 Scripts executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Description: Verify that v0.2.0 tag exists in the upstream repository
gh api repos/rrwick/Core-SNP-filter/git/refs/tags/v0.2.0 --silent || echo "Tag v0.2.0 not found"
Length of output: 67
Script:
#!/bin/bash
# Let's try a different approach to verify the version
# 1. Check if the repository exists and get basic info
gh api repos/rrwick/Core-SNP-filter
# 2. List all tags to see available versions
gh api repos/rrwick/Core-SNP-filter/tags
Length of output: 6758
🧰 Tools
🪛 yamllint
[error] 1-1: syntax error: found character '%' that cannot start any token
(syntax)
8-9: Verify source tarball checksum
Let's verify the SHA256 checksum matches the source tarball.
Update
core-snp-filter: 0.1.1 → 0.2.0recipes/core-snp-filter(click to view/edit other files)@rrwickThis pull request was automatically generated (see docs).