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Add recipe for GPatch #52716

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merged 4 commits into from
Dec 11, 2024
Merged

Add recipe for GPatch #52716

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098178a
Add recipe for GPatch
Dec 10, 2024
81f1520
Fix dependencies
Dec 10, 2024
2f3fe80
Should fix module not found error
Dec 10, 2024
64be706
fix the max_pin value
martin-g Dec 11, 2024
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41 changes: 41 additions & 0 deletions recipes/gpatch/meta.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,41 @@
{% set name = "GPatch" %}
{% set version = "0.3.4" %}

package:
name: "{{ name|lower }}"
version: "{{ version }}"

source:
url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
sha256: 243b63181500dabdc4934cb2433e13448f710fff2211e28af46ca365ca418c5a

build:
number: 0
entry_points:
- GPatch = GPatch.GPatch:main
script: "{{ PYTHON }} -m pip install . -vv"
noarch: python
run_exports:
- {{ pin_subpackage('gpatch', max_pin="x.x") }}

requirements:
host:
- python >=3.7,<3.13
- pip
run:
- python >=3.7,<3.13
- biopython >=1.84
- pysam >=0.22.1

test:
imports:
- GPatch
commands:
- GPatch --help

about:
home: "https://github.com/adadiehl/GPatch.git"
license: MIT
license_family: MIT
license_file: LICENSE
summary: Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
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