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recipe for scROSHI based on CRAN #52762

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22 changes: 22 additions & 0 deletions recipes/r-scroshi/build.sh
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#!/bin/bash

# 'Autobrew' is being used by more and more packages these days
# to grab static libraries from Homebrew bottles. These bottles
# are fetched via Homebrew's --force-bottle option which grabs
# a bottle for the build machine which may not be macOS 10.9.
# Also, we want to use conda packages (and shared libraries) for
# these 'system' dependencies. See:
# https://github.com/jeroen/autobrew/issues/3
export DISABLE_AUTOBREW=1

# R refuses to build packages that mark themselves as Priority: Recommended
mv DESCRIPTION DESCRIPTION.old
grep -va '^Priority: ' DESCRIPTION.old > DESCRIPTION
# shellcheck disable=SC2086
${R} CMD INSTALL --build . ${R_ARGS}

# Add more build steps here, if they are necessary.

# See
# https://docs.conda.io/projects/conda-build
# for a list of environment variables that are set during the build process.
54 changes: 54 additions & 0 deletions recipes/r-scroshi/meta.yaml
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{% set version = '1.0.0.0' %}

package:
name: r-scroshi
version: {{ version|replace("-", "_") }}

source:
url:
- {{ cran_mirror }}/src/contrib/scROSHI_{{ version }}.tar.gz
- {{ cran_mirror }}/src/contrib/Archive/scROSHI/scROSHI_{{ version }}.tar.gz
sha256: 332ed379c27d4becfae31f164e6267850cd927dbb357c3a77de1f320d65baf96

build:
number: 0
run_exports:
- {{ pin_subpackage("r-scroshi", max_pin="x") }}
rpaths:
- lib/R/lib/
- lib/
noarch: generic

requirements:
host:
- r-base ==4.3.2
- bioconductor-s4vectors ==0.40.2
- bioconductor-singlecellexperiment ==1.24.0
- bioconductor-summarizedexperiment ==1.32.0
- bioconductor-limma ==3.58.1
- r-uwot ==0.1.16

run:
- r-base ==4.3.2
- bioconductor-s4vectors ==0.40.2
- bioconductor-singlecellexperiment ==1.24.0
- bioconductor-summarizedexperiment ==1.32.0
- bioconductor-limma ==3.58.1
- r-uwot ==0.1.16

test:
commands:
- $R -e "library('scROSHI')" # [not win]
- "\"%R%\" -e \"library('scROSHI')\"" # [win]

about:
home: https://CRAN.R-project.org/package=scROSHI
license: MIT
summary: 'scROSHI: robust supervised hierarchical identification of single cells'
license_family: MIT
license_file:
- '{{ environ["PREFIX"] }}/lib/R/share/licenses/MIT'
- LICENSE
extra:
identifiers:
- doi:10.1093/nargab/lqad058
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