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qiyunzhu authored Apr 10, 2024
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Expand Up @@ -6,6 +6,7 @@ biom 2.1.15-dev

Performance improvements:

* Add NumPy 2.0 support. PR [#950](https://github.com/biocore/biom-format/pull/950) ensures code compatibility with NumPy 2.0. This support is yet to be added to the CI testing matrix.
* Revise `Table._fast_merge` to use COO directly. For very large tables, this reduces runtime by ~50x and memory by ~5x. See PR [#913](https://github.com/biocore/biom-format/pull/933).
* Drastically reduce the memory needs of subsampling when sums are large. Also adds 64-bit support. See PR [#935](https://github.com/biocore/biom-format/pull/935).
* Improve handling of not-perfectly-integer inputs. See PR [#938](https://github.com/biocore/biom-format/pull/938).
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