This proxies and consolidates other Rapid Automated Biodiversity Risk Assessments intallations.
Runing individual apps:
It is important that you have:
- A published checklist in IPT
- Published occurrences in one or many IPTs
You will need at least 4GB of RAM and it is recommended 50GB of disk and 4 cores, but it varies with the data to load.
Install Git, and latest Docker and docker-compose.
Clone the repository:
$ git clone https://github.com/biodivdev/rrapp-compose $ cd rrapp-compose
For latest elasticsearch you might need to configure the machine with the following:
$ sudo sysctl -w vm.max_map_count=262144
By default it will bind to port 8080, it can be changed at config/Caddyfile (not the Caddyfile at root, the one at config directory), you can also add a domain and automatic HTTPS, see caddy documentation for other options.
The file config/dwc-bot.list is a list of IPT's where to get the data from.
The file config/config.ini is the configuration of all apps:
- ELASTICSEARCH=http://elasticsearch:9200 tells which elasticsearch to use
- INDEX=dwc Tells which index to use on the elasticsearch
- LOOP=true Tells for the bot and the index to keep runing timely (auto-update the data)
- SOURCE=lista_flora_do_brasil Tells the name of the resource to use as taxonomic backbone
Download the images of the apps (important to keep up-to-date):
$ docker-compose pull
Start them all:
$ docker-compose up -d
They will start in background. You can follow the logs with:
$ docker-compose logs
MIT