Using ImageJ.JS as the front-end for model test run

[Nanguage]

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[Nanguage]

TODO List:

• Convert ImJoy plugin to a Vue component
• Re shape the image to satisfy the spec
• Change sample input to test-input(.npy file) by default
• Add the code to wait imjoy start before imagej.js start
• Fix the bug caused by image byte endian
• Check if the item is a model or not
• Check if the model is exist or not from: the manifest
• Check if the model is an img-to-img model, if it is, will show result using a table.
• Create padder to allow user to input any xyz size image
• Tiler for chunking the big images
• Advance setting for set the tile size, input axes ...

[Nanguage]

Now, by adding padding, it is possible to input images of any size. However, there are some models whose shape meets the spec but cannot work, such as the affable-shark model. @oeway

Details:

I think the shape of input conforms to the definition in the spec:

The rdf of shark model:

[oeway]

Now, by adding padding, it is possible to input images of any size. However, there are some models whose shape meets the spec but cannot work, such as the affable-shark model. @oeway

Great! Thanks!
Will need to fix from the server side. Will get back to you once I fixed it.

Edit: Please also rebase from the main branch to allow merging the PR.

[Nanguage]

How to display the results of non-img-to-img models, such as the HPA classification model. One idea is to display it as a table. I'm not sure if ImageJ.JS can open a window that can embed HTML elements. Or we simply display the output array as an image. @oeway

[jmetz]

ImageJ should have a ResultsTable that tabular data can be displayed in. That would be very familiar for ImageJ users

[oeway]

ImageJ should have a ResultsTable that tabular data can be displayed in. That would be very familiar for ImageJ users

Good suggestion! Yes, we should use the result table, maybe via a imagej macro call.

Reference: https://forum.image.sc/t/creating-custom-tables-in-imagej/33100/2

[Nanguage]

Show classification result as a table

Advance option allow user set the tile size and overlap

Could you give it a try? @oeway If it's ok, I think it's time for merge.

[oeway]

Looks good!