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Disable pymc extension waiting for new bambi release
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In the current 0.9.1 release of bambi the numpy version is restricted to <1.22.
As pypi does not allow us to pull the current git version of bambi as a
dependency we need to disable the pymc extension for now.

Signed-off-by: Johannes Mueller <[email protected]>
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johannes-mueller committed Nov 10, 2022
1 parent 8c83db8 commit 441a8de
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5 changes: 4 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -23,6 +23,9 @@ In this file noteworthy changes of new releases of pyLife are documented since

### Other changes

* Switch from pymc3 to pymc version 4 for Bayesian Wöhler analysis
* Switch from pymc3 to pymc version 4 for Bayesian Wöhler analysis. The
extension is not installable via pip as the current bambi release pulls a
numpy version that is incompatible with our demandas. If you need it, please
install bambi manually from their current git repo and then pymc via pip.

* Lift numpy version restrictions
8 changes: 4 additions & 4 deletions setup.cfg
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Expand Up @@ -93,11 +93,11 @@ analysis =
tsfresh =
tsfresh

pymc =
pymc
bambi @ git+https://github.com/bambinos/bambi.git#egg=bambi
# pymc =
# pymc
# bambi @ git+https://github.com/bambinos/bambi.git#egg=bambi

all = %(tsfresh)s %(pymc)s
all = %(tsfresh)s

extras =
jupyter
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