Update to numpy 2.0 (#192) #539
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name: tests | |
on: | |
push: | |
branches: | |
- "main" | |
tags: | |
- 'v*' | |
pull_request: | |
workflow_dispatch: | |
jobs: | |
linting: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/lint@v2 | |
manifest: | |
name: Check Manifest | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/check_manifest@v2 | |
test: | |
needs: [linting, manifest] | |
name: ${{ matrix.os }} py${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
# Run all supported Python versions on linux | |
os: [ubuntu-latest] | |
python-version: ["3.10", "3.11", "3.12"] | |
# Include one windows and two macOS (intel based and arm based) runs | |
include: | |
- os: macos-13 | |
python-version: "3.12" | |
- os: macos-latest | |
python-version: "3.12" | |
- os: windows-latest | |
python-version: "3.12" | |
steps: | |
- name: Cache brainglobe directory | |
uses: actions/cache@v3 | |
with: | |
path: | # ensure we don't cache any interrupted atlas download and extraction, if e.g. we cancel the workflow manually | |
~/.brainglobe | |
!~/.brainglobe/atlas.tar.gz | |
key: bg-atlases | |
- name: install HDF5 libs on ARM Mac | |
if: matrix.os == 'macos-latest' | |
run: brew install hdf5 | |
# Setup pyqt libraries | |
- uses: tlambert03/setup-qt-libs@v1 | |
# Helps set up VTK with a headless display | |
- uses: pyvista/setup-headless-display-action@v2 | |
# Run tests | |
- uses: neuroinformatics-unit/actions/test@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
secret-codecov-token: ${{ secrets.CODECOV_TOKEN }} | |
use-xvfb: true | |
build_sdist_wheels: | |
name: Build source distribution | |
needs: [test] | |
if: github.event_name == 'push' && github.ref_type == 'tag' | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/build_sdist_wheels@v2 | |
upload_all: | |
name: Publish build distributions | |
needs: [build_sdist_wheels] | |
runs-on: ubuntu-latest | |
steps: | |
- uses: neuroinformatics-unit/actions/upload_pypi@v2 | |
with: | |
secret-pypi-key: ${{ secrets.TWINE_API_KEY }} |