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[math & dyn] add brainpy.math.exprel, and change the code in the corresponding HH neuron models to improve numerical computation accuracy #557

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merged 8 commits into from
Dec 10, 2023

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Description

How Has This Been Tested

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Documentation (non-breaking change which updates documentation)
  • Breaking change (fix or feature that would cause existing functionality to change)
  • Code style (formatting, renaming)
  • Refactoring (no functional changes, no api changes)
  • Other (please describe here):

Checklist

  • Code follows the code style of this project.
  • Changes follow the CONTRIBUTING guidelines.
  • Update necessary documentation accordingly.
  • Lint and tests pass locally with the changes.
  • Check issues and pull requests first. You don't want to duplicate effort.

Other information

chaoming0625 and others added 8 commits December 7, 2023 11:27
* [running] fix multiprocessing bugs (brainpy#547)

* [running] fix multiprocessing bugs

* fix tests

* [docs] Fix typo in docs (brainpy#549)

* ⬆️ Bump conda-incubator/setup-miniconda from 2 to 3 (brainpy#551)

Bumps [conda-incubator/setup-miniconda](https://github.com/conda-incubator/setup-miniconda) from 2 to 3.
- [Release notes](https://github.com/conda-incubator/setup-miniconda/releases)
- [Changelog](https://github.com/conda-incubator/setup-miniconda/blob/main/CHANGELOG.md)
- [Commits](conda-incubator/setup-miniconda@v2...v3)

---
updated-dependencies:
- dependency-name: conda-incubator/setup-miniconda
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* updates  (brainpy#550)

* [running] fix multiprocessing bugs

* fix tests

* [doc] update doc

* update

* [math] add `brainpy.math.gpu_memory_preallocation()` for controlling GPU memory preallocation

* [math] `clear_buffer_memory` support to clear array and compilation both

* [dyn] compatible old version of `.reset_state()` function

* [setup] update installation info

* ``brainpy.math.defjvp`` and ``brainpy.math.XLACustomOp.defjvp`` (brainpy#554)

* [running] fix multiprocessing bugs

* fix tests

* [doc] update doc

* update

* [math] add `brainpy.math.gpu_memory_preallocation()` for controlling GPU memory preallocation

* [math] `clear_buffer_memory` support to clear array and compilation both

* [dyn] compatible old version of `.reset_state()` function

* [setup] update installation info

* [install] upgrade dependency

* updates

* [math] add `brainpy.math.defjvp`, support to define jvp rules for Primitive with multiple results. See examples in `test_ad_support.py`

* [math] add `brainpy.math.XLACustomOp.defjvp`

* [doc] upgrade `brainpy.math.defjvp` docstring

* ⬆️ Bump actions/setup-python from 4 to 5 (brainpy#555)

Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v4...v5)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: Sichao He <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…elay register API `DynamicalSystem.register_local_delay()` and `DynamicalSystem.get_local_delay()`
…rresponding HH neuron models to improve numerical computation accuracy
@chaoming0625 chaoming0625 merged commit b1e80e8 into brainpy:master Dec 10, 2023
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