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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,36 +1,36 @@ | ||
| lint: | ||
| files_exist: | ||
| - CODE_OF_CONDUCT.md | ||
| - assets/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_dark.png | ||
| - .github/ISSUE_TEMPLATE/config.yml | ||
| - .github/workflows/awstest.yml | ||
| - .github/workflows/awsfulltest.yml | ||
| - .github/.dockstore.yml | ||
| - .github/workflows/branch.yml | ||
| - .github/workflows/linting_comment.yml | ||
| - conf/test.config | ||
| - conf/test_full.config | ||
| - .github/workflows/ci.yml | ||
| - CODE_OF_CONDUCT.md | ||
| - assets/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_dark.png | ||
| - .github/ISSUE_TEMPLATE/config.yml | ||
| - .github/workflows/awstest.yml | ||
| - .github/workflows/awsfulltest.yml | ||
| - .github/.dockstore.yml | ||
| - .github/workflows/branch.yml | ||
| - .github/workflows/linting_comment.yml | ||
| - conf/test.config | ||
| - conf/test_full.config | ||
| - .github/workflows/ci.yml | ||
| files_unchanged: | ||
| - .github/workflows/linting.yml | ||
| - CODE_OF_CONDUCT.md | ||
| - assets/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_dark.png | ||
| - .github/ISSUE_TEMPLATE/bug_report.yml | ||
| - .github/workflows/linting.yml | ||
| - CODE_OF_CONDUCT.md | ||
| - assets/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_light.png | ||
| - docs/images/nf-core-primeseq_logo_dark.png | ||
| - .github/ISSUE_TEMPLATE/bug_report.yml | ||
| multiqc_config: | ||
| - report_comment | ||
| - report_comment | ||
| nextflow_config: | ||
| - manifest.name | ||
| - manifest.homePage | ||
| - manifest.name | ||
| - manifest.homePage | ||
| nf_core_version: 2.14.1 | ||
| repository_type: pipeline | ||
| template: | ||
| author: | ||
| - Martin Proks | ||
| - Nazmus Salehin | ||
| - Martin Proks | ||
| - Nazmus Salehin | ||
| description: PRIME-seq preprocessing pipeline | ||
| name: primeseq | ||
| prefix: brickmanlab |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,31 +1,31 @@ | ||
| { | ||
| "$schema": "http://json-schema.org/draft-07/schema", | ||
| "$id": "https://raw.githubusercontent.com/brickmanlab/primeseq/master/assets/schema_wells.json", | ||
| "title": "brickmanlab/primeseq pipeline - params.wells schema", | ||
| "description": "Schema for the file provided with params.wells", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "pool": { | ||
| "type": "string", | ||
| "pattern": "^\\S+$", | ||
| "errorMessage": "Same name as Sample in samplesheet", | ||
| "meta": ["pool"] | ||
| }, | ||
| "well": { | ||
| "type": "string", | ||
| "pattern": "^[A-Z][0-9]", | ||
| "errorMessage": "Well location like A1", | ||
| "meta": ["well"] | ||
| }, | ||
| "sample": { | ||
| "type": "string", | ||
| "pattern": "^\\S+$", | ||
| "errorMessage": "Sample name must be provided and cannot contain spaces", | ||
| "meta": ["sample"] | ||
| } | ||
| }, | ||
| "required": ["pool", "well", "sample"] | ||
| } | ||
| "$schema": "http://json-schema.org/draft-07/schema", | ||
| "$id": "https://raw.githubusercontent.com/brickmanlab/primeseq/master/assets/schema_wells.json", | ||
| "title": "brickmanlab/primeseq pipeline - params.wells schema", | ||
| "description": "Schema for the file provided with params.wells", | ||
| "type": "array", | ||
| "items": { | ||
| "type": "object", | ||
| "properties": { | ||
| "pool": { | ||
| "type": "string", | ||
| "pattern": "^\\S+$", | ||
| "errorMessage": "Same name as Sample in samplesheet", | ||
| "meta": ["pool"] | ||
| }, | ||
| "well": { | ||
| "type": "string", | ||
| "pattern": "^[A-Z][0-9]", | ||
| "errorMessage": "Well location like A1", | ||
| "meta": ["well"] | ||
| }, | ||
| "sample": { | ||
| "type": "string", | ||
| "pattern": "^\\S+$", | ||
| "errorMessage": "Sample name must be provided and cannot contain spaces", | ||
| "meta": ["sample"] | ||
| } | ||
| }, | ||
| "required": ["pool", "well", "sample"] | ||
| } | ||
| } |
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