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Pull requests: broadinstitute/gatk

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Pull requests list

Extract avros for a VDS but only include the NEW samples that are in Foxtrot
#9105 opened Mar 3, 2025 by RoriCremer • Draft
GCP Batch-friendly Cromwell root detection [VS-1532] (#9069)
#9102 opened Feb 26, 2025 by mcovarr Loading…
6
VS-1584 build variants docker on m4
#9099 opened Feb 19, 2025 by gbggrant Loading…
2
CRAM 3.1 read support
#9095 opened Feb 11, 2025 by cmnbroad • Draft
Add samtools for file format testing.
#9093 opened Feb 10, 2025 by cmnbroad • Draft
2
Fixing what looks like a a bug in MendelianViolationEvaluator
#9080 opened Jan 15, 2025 by lbergelson Loading…
1
Add VAT clinvar reverse complement
#9070 opened Jan 7, 2025 by RoriCremer Loading…
8
Sample chromosome ploidy support for RWB Echo [VS-1500] ⛔ DO NOT MERGE ⛔
#9051 opened Nov 20, 2024 by mcovarr Loading…
6
[DO NOT MERGE]
#9045 opened Nov 15, 2024 by jamesemery Loading…
15
Yyu test 1
#9026 opened Oct 30, 2024 by yonghaoy • Draft
Create tools for SV VCF cleaning
#8996 opened Oct 9, 2024 by kjaisingh • Draft
@kjaisingh
22
FlowFeatureMapper speed improvements
#8982 opened Sep 16, 2024 by dror27 • Draft
12
Bundle support for FeatureInputs, references; add CreateBundle tool.
#8944 opened Aug 6, 2024 by cmnbroad • Draft
[DRAFT] Merge master to ah var store again [VS-1178]
#8890 opened Jun 24, 2024 by mcovarr • Draft
1
Add keep-contig-names parameter
#8865 opened Jun 6, 2024 by gokalpcelik • Draft
3
Funcotator - removing the required transcript file
#8863 opened Jun 5, 2024 by jonn-smith • Draft
35
Changed flow allele filtering in Mutect2 to work separately on the tumor and the normal samples
#8855 opened Jun 1, 2024 by ilyasoifer • Draft
Rc vs 1365 hatcher testing parquet
#8845 opened May 23, 2024 by RoriCremer • Draft
Added long read walkers from long-running branch.
#8799 opened Apr 29, 2024 by jonn-smith Loading…
32
⛔ [DO NOT MERGE] ⛔ Fix partition grouping bug ⛔
#8785 opened Apr 21, 2024 by mcovarr Loading…
1
add echocallset as an option for integration test
#8757 opened Apr 1, 2024 by RoriCremer Loading…
DRAFT: Use temp snapshot of htsjdk with rans refactoring.
#8730 opened Mar 11, 2024 by cmnbroad • Draft
Leave validation cluster running at end [VS-901]
#8729 opened Mar 11, 2024 by mcovarr Loading…
Test out the preview version of the next GKL (DO NOT MERGE)
#8712 opened Mar 4, 2024 by droazen Loading…
@jamesemery
15
Vs 299 spike speed up integration tests
#8706 opened Feb 29, 2024 by koncheto-broad • Draft
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