Merge pull request #749 from broadinstitute/qh/coverage_global

Add coverage release global in GRCh37
broadinstitute · Jan 2, 2025 · a0f0f33 · a0f0f33
2 parents e7fc859 + 31b2c67
commit a0f0f33
Showing 1 changed file with 10 additions and 4 deletions.
diff --git a/gnomad/resources/grch37/gnomad.py b/gnomad/resources/grch37/gnomad.py
@@ -14,6 +14,12 @@
 EXOME_RELEASES = ["2.1", "2.1.1"]
 GENOME_RELEASES = ["2.1", "2.1.1"]
 
+EXOME_COVERAGE_RELEASES = ["2.1"]
+GENOME_COVERAGE_RELEASES = ["2.1"]
+
+CURRENT_EXOME_COVERAGE_RELEASE = "2.1"
+CURRENT_GENOME_COVERAGE_RELEASE = "2.1"
+
 SUBPOPS = {
     "NFE": ["BGR", "EST", "NWE", "SEU", "SWE", "ONF"],
     "EAS": ["KOR", "JPN", "OEA"],
@@ -174,11 +180,11 @@ def coverage(data_type: str) -> VersionedTableResource:
         raise DataException(f"{data_type} not in {DATA_TYPES}")
 
     if data_type == "exomes":
-        current_release = "2.1"
-        releases = [r for r in EXOME_RELEASES if r != "2.1.1"]
+        current_release = CURRENT_EXOME_COVERAGE_RELEASE
+        releases = EXOME_COVERAGE_RELEASES
     else:
-        current_release = "2.1"
-        releases = [r for r in GENOME_RELEASES if r != "2.1.1"]
+        current_release = CURRENT_GENOME_COVERAGE_RELEASE
+        releases = GENOME_COVERAGE_RELEASES
 
     return VersionedTableResource(
         current_release,