Minor adjustments/fixes

broadinstitute · Jul 5, 2020 · 2b93cf0 · 2b93cf0
1 parent 1e7e36c
commit 2b93cf0
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Showing 5 changed files with 52 additions and 60 deletions.
diff --git a/Fig2_summary_stats.ipynb b/Fig2_summary_stats.ipynb
diff --git a/Fig3_finemapping.ipynb b/Fig3_finemapping.ipynb
diff --git a/Fig4_functional.ipynb b/Fig4_functional.ipynb
@@ -230,8 +230,6 @@
     }
    ],
    "source": [
-    "import imp\n",
-    "imp.reload(qtl.plot)\n",
     "eargs = {'fmt':'.', 'ms':8,   'lw':1, 'clip_on':False, 'c':style.qtl_color_s['eqtl'], 'label':'eQTL'}\n",
     "sargs = {'fmt':'D', 'ms':3.5, 'lw':1, 'clip_on':False, 'c':style.qtl_color_s['sqtl'], 'label':'sQTL'}\n",
     "plot_enrichment(eqtl_tissue_avg_df, sqtl_tissue_avg_df, mean_df, std_df, eargs, sargs)\n",

diff --git a/Fig5_GWAS.ipynb b/Fig5_GWAS.ipynb
diff --git a/data/Fig3B_finemapping_exp_validation_data.txt b/data/Fig3B_finemapping_exp_validation_data.txt
@@ -1,11 +1,11 @@
 method	experiment	estimate	ci_low	ci_high
-Top eVariant	MPRA	1.14406	0.134171	0.135613
-CaVEMaN	SuRE	1.99092	0.158696	0.288539
-CAVIAR	MPRA	1.99092	0.259685	0.259685
-dap-g	SuRE	2.1929	0.230831	0.230831
-Consensus	MPRA	2.36602	0.360674	0.360674
-Top eVariant	SuRE	0.171681	0.282768	0.282768
-CaVEMaN	MPRA	0.750201	0.129843	0.129843
-CAVIAR	SuRE	0.85119	0.115416	0.129843
-dap-g	MPRA	0.908898	0.0865617	0.0865617
-Consensus	SuRE	1.1253	0.18755	0.288539
+Top eVariant	MPRA	2.21002	0.196264	0.217819
+CaVEMaN	SuRE	3.9749	0.414049	0.880054
+CAVIAR	MPRA	3.9749	0.654785	0.78392
+dap-g	SuRE	4.57223	0.676032	0.793331
+Consensus	MPRA	5.15517	1.14032	1.4642
+Top eVariant	SuRE	1.12637	0.20048	0.243889
+CaVEMaN	MPRA	1.68203	0.14477	0.158404
+CAVIAR	SuRE	1.80399	0.138697	0.169889
+dap-g	MPRA	1.87761	0.109344	0.116105
+Consensus	SuRE	2.18147	0.265931	0.482984