logging

.github/workflows/test_illumina_genotyping_array.yml

@@ -249,21 +249,20 @@ jobs:
           done
           done
           #export submission ids to github env
-          echo "SUBMISSION_IDS=${SUBMISSION_IDS[@]}" >> $GITHUB_ENV
-          echo $GITHUB_ENV
+          echo "submission_ids=${SUBMISSION_IDS[@]}" >> $GITHUB_ENV
 
       - name: Monitor Workflow Status
         run: |
           echo "Monitoring the status of submitted workflows..."
-          echo "SUBMISSION_IDS: $SUBMISSION_IDS"
-          for SUBMISSION_ID in "${SUBMISSION_IDS[@]}"; do
+          echo $submission_ids
+          for SUBMISSION_ID in "${submission_ids[@]}"; do
             echo "Polling submission status for Submission ID: $SUBMISSION_ID"
-            SUBMISSION_ID=$(python3 scripts/firecloud_api/firecloud_api2.py poll_job_status \
+            python3 scripts/firecloud_api/firecloud_api2.py poll_job_status \
                 --submission_id "$SUBMISSION_ID" \
                 --sa-json-b64 "$SA_JSON_B64" \
                 --user "[email protected]" \
                 --workspace-namespace "warp-pipelines" \
-                --workspace-name "WARP Tests")
+                --workspace-name "WARP Tests"
      
 
             if [ -z "$SUBMISSION_ID" ]; then