cleaning up

broadinstitute · Nov 14, 2024 · 5505004 · 5505004
1 parent 2284fa2
commit 5505004
Showing 1 changed file with 0 additions and 11 deletions.
diff --git a/tasks/skylab/StarAlign.wdl b/tasks/skylab/StarAlign.wdl
@@ -333,17 +333,6 @@ task STARsoloFastq {
     # validate the bam with samtools quickcheck
     samtools quickcheck -v Aligned.sortedByCoord.out.bam
 
-    samtools quickcheck *.bam && echo 'all ok' \
-    || echo 'fail!'
-
-    # wait until star completes, then write out complete.txt file
-    wait
-
-    touch STARsolo_completed.txt
-    echo "done" > STARsolo_completed.txt
-
-    echo "STARsolo command completed with exit code $?"
-
 
     echo "UMI LEN " $UMILen