print instead of log

broadinstitute · Dec 10, 2024 · d6359fb · d6359fb
1 parent b42fcf9
commit d6359fb
Showing 1 changed file with 2 additions and 4 deletions.
diff --git a/.github/workflows/test_illumina_genotyping_array.yml b/.github/workflows/test_illumina_genotyping_array.yml
@@ -230,15 +230,13 @@ jobs:
             for input_file in "$INPUTS_DIR"/*.json; do
               while [ $attempt -le $MAX_RETRIES ]; do
                 echo "Attempt $attempt: Submitting job for input file: $input_file"
-                #echo "Submitting job for input file: $input_file"
-                #cat "$SUBMISSION_DATA_FILE"
-                $SUBMISSION_ID=$(python3 scripts/firecloud_api/firecloud_api2.py submit_job \
+                SUBMISSION_ID=$(python3 scripts/firecloud_api/firecloud_api2.py submit_job \
                           --workspace-namespace "warp-pipelines" \
                           --workspace-name "WARP Tests" \
                           --sa-json-b64 "$SA_JSON_B64" \
                           --user "[email protected]" \
                           --submission_data_file "$SUBMISSION_DATA_FILE")
-                #echo "submission id is $SUBMISSION_ID"
+                echo "submission id is $SUBMISSION_ID"
 
                 #SUBMISSION_ID=$(firecloud_action submit_job --submission_data_file "$SUBMISSION_DATA_FILE")