methoduri

broadinstitute · Nov 20, 2024 · d9a21a0 · d9a21a0
1 parent 0ff4317
commit d9a21a0
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 0 deletions.
diff --git a/.github/workflows/test_illumina_genotyping_array.yml b/.github/workflows/test_illumina_genotyping_array.yml
@@ -159,6 +159,7 @@ jobs:
                                                                                 --inputs_json "$input_file" \
                                                                                 --update_truth "$UPDATE_TRUTH_BOOL")
             echo "Uploading test input file: $test_input_file"
+          
             firecloud_action upload_test_inputs --pipeline_name $PIPELINE_NAME --test_input_file "$test_input_file" --branch_name "${{ github.head_ref }}"
 
             echo "Submitting job for input file: $input_file"

diff --git a/scripts/firecloud_api/firecloud_api.py b/scripts/firecloud_api/firecloud_api.py
@@ -171,6 +171,13 @@ def upload_test_inputs(self, pipeline_name, test_inputs, branch_name):
             config["inputs"] = inputs_json
 
         # update the config with the new branch name
+
+        # Construct the methodUri with the branch name
+        base_url = "github.com/broadinstitute/warp/TestIlluminaGenotypingArray"
+        method_uri = f"dockstore://{quote(base_url)}/{branch_name}"
+        print(f"Updating methodUri with branch name: {method_uri}")
+        config["methodRepoMethod"]["methodUri"] = method_uri
+
         print(f"Updating methodVersion with branch name: {branch_name}")
         config["methodRepoMethod"]["methodVersion"] = branch_name