nhash_id optional

broadinstitute · Sep 23, 2024 · dac4de4 · dac4de4
1 parent 289b3a3
commit dac4de4
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/pipelines/skylab/multiome/Multiome.wdl b/pipelines/skylab/multiome/Multiome.wdl
@@ -16,7 +16,7 @@ workflow Multiome {
         String cloud_provider
         String input_id
         # Additional library aliquot ID
-        String? nhash_id = ""
+        String? nhash_id
 
         # Optimus Inputs
         String counting_mode = "sn_rna"

diff --git a/pipelines/skylab/optimus/Optimus.wdl b/pipelines/skylab/optimus/Optimus.wdl
@@ -26,7 +26,7 @@ workflow Optimus {
     Array[File]? i1_fastq
     String input_id
     # String for additional library aliquot ID
-    String? gex_nhash_id = ""
+    String? gex_nhash_id
     String output_bam_basename = input_id
     String? input_name
     String? input_id_metadata_field

diff --git a/tasks/skylab/H5adUtils.wdl b/tasks/skylab/H5adUtils.wdl
@@ -9,7 +9,7 @@ task OptimusH5adGeneration {
     String warp_tools_docker_path
     # name of the sample
     String input_id
-    String gex_nhash_id = ""
+    String? gex_nhash_id
     # user provided id
     String? counting_mode
     Int expected_cells = 3000
@@ -119,7 +119,7 @@ task SingleNucleusOptimusH5adOutput {
         # name of the sample
         String input_id
         # additional aliquot id
-        String gex_nhash_id = ""
+        String? gex_nhash_id
         # user provided id
         String? counting_mode
         Int expected_cells = 3000