grabbranch name

.github/workflows/test_illumina_genotyping_array.yml

@@ -45,9 +45,10 @@ on:
 
 env:
   PROJECT_NAME: WARP
-  # Github repo name
   REPOSITORY_NAME: ${{ github.event.repository.name }}
   SA_JSON_B64: ${{ secrets.PDT_TESTER_SA_B64 }}
+  PIPELINE_NAME: IlluminaGenotypingArray
+  DOCKSTORE_PIPELINE_NAME: IlluminaGenotypingArray
 
 
 jobs:
@@ -59,11 +60,6 @@ jobs:
       id-token: 'write'
 
     steps:
-      # Add a step to wait to account for github -> dockstore -> terra delays
-      - name: Wait Before Starting
-        run: |
-          echo "Waiting for 5 minutes before starting..."
-          sleep 1  # time in seconds, update this when we really want a delay
       # actions/checkout MUST come before auth
       - uses: actions/checkout@v3
         with:
@@ -74,17 +70,13 @@ jobs:
         uses: actions/setup-python@v4
         with:
           python-version: '3.11'
+
       - name: Install dependencies
         run: |
           pwd
           cd scripts/firecloud_api/
           pip install -r requirements.txt
 
-      # Set the branch name.
-      # github.head_ref contains the name of the branch in the context of a pull request
-      # if github.head_ref is empty, it implies the workflow was triggered manually
-      # ${GITHUB_REF##*/} extracts the branch name from GITHUB_REF.
-      # The ##*/ is a parameter expansion that removes the refs/heads/ prefix, leaving just the branch name.
       - name: Set Branch Name
         id: set_branch
         run: |
@@ -103,14 +95,15 @@ jobs:
           # Capture the output of the script (commit ID)
           COMMIT_HASH_FROM_FETCH=$(python scripts/dockstore_api/fetch_dockstore_commit.py \
             $DOCKSTORE_TOKEN \
-            IlluminaGenotypingArray \
+            $DOCKSTORE_PIPELINE_NAME \
             $branch_name)
           # Export the commit hash as an environment variable
           echo "DOCKSTORE_COMMIT_HASH=$COMMIT_HASH_FROM_FETCH" >> $GITHUB_ENV
 
         env:
-          ##TODO NEED TO ADD DOCKSTORE_TOKEN FOR SERVICE ACCOUNT##
+          ## TODO NEED TO ADD DOCKSTORE_TOKEN FOR SERVICE ACCOUNT ##
           DOCKSTORE_TOKEN: ${{ secrets.DOCKSTORE_TOKEN }}
+          DOCKSTORE_PIPELINE_NAME: ${{ env.DOCKSTORE_PIPELINE_NAME }}
           branch_name: ${{ env.branch_name }}
 
       - name: Set Commit Hash