Code

Fix join barcode step for Opossum#1397

Code

Merged

khajoue2 merged 23 commits intodevelopbroadinstitute/warp:developfrom pd-2747-multiome-opossumbroadinstitute/warp:pd-2747-multiome-opossumCopy head branch name to clipboardNov 6, 2024

+50-20

Commits

Commits on Oct 21, 2024

• Fix: Use CSI instead of TBI indexing in tabix command to support chromosomes larger than 512 Mbp.

  khajoue2

  committed
  6aac6b6

  Copy full SHA for 6aac6b6

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  003c7cd

  Copy full SHA for 003c7cd

Commits on Nov 4, 2024

• Merge branch 'develop' into pd-2747-multiome-opossum

  khajoue2

  authored
  4180947

  Copy full SHA for 4180947

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  59b58d2

  Copy full SHA for 59b58d2

• updated changelogs

  khajoue2

  committed
  507dd83

  Copy full SHA for 507dd83

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  a61c9db

  Copy full SHA for a61c9db

Commits on Nov 5, 2024

• updated pairedtag version

  khajoue2

  committed
  31993d8

  Copy full SHA for 31993d8

• Merge branch 'pd-2747-multiome-opossum' of github.com:broadinstitute/warp into pd-2747-multiome-opossum

  khajoue2

  committed
  df9d7f6

  Copy full SHA for df9d7f6

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  ad8366a

  Copy full SHA for ad8366a

• Merge branch 'develop' into pd-2747-multiome-opossum

  khajoue2

  authored
  e5987b3

  Copy full SHA for e5987b3

• CreateFragmentFile task now uses csi index format

  khajoue2

  committed
  5fef0e6

  Copy full SHA for 5fef0e6

• Update pipelines/skylab/multiome/Multiome.changelog.md

  Show description for 72ab1e2
  

  khajoue2

  and

  ekiernan

  authored
  72ab1e2

  Copy full SHA for 72ab1e2

• Update pipelines/skylab/optimus/Optimus.changelog.md

  Show description for dd4fc3f
  

  khajoue2

  and

  ekiernan

  authored
  dd4fc3f

  Copy full SHA for dd4fc3f

• Update pipelines/skylab/slideseq/SlideSeq.changelog.md

  Show description for b24ab5b
  

  khajoue2

  and

  ekiernan

  authored
  b24ab5b

  Copy full SHA for b24ab5b

• Update pipelines/skylab/smartseq2_single_nucleus_multisample/MultiSampleSmartSeq2SingleNucleus.changelog.md

  Show description for 37bbad9
  

  khajoue2

  and

  ekiernan

  authored
  37bbad9

  Copy full SHA for 37bbad9

• Update pipelines/skylab/paired_tag/PairedTag.changelog.md

  Show description for 1eaa77f
  

  khajoue2

  and

  ekiernan

  authored
  1eaa77f

  Copy full SHA for 1eaa77f

• Updated pipeline_versions.txt with all pipeline version information

  actions-user

  committed
  96dbba8

  Copy full SHA for 96dbba8

• updating indexing for pairedtag and changing index file name

  ekiernan

  committed
  6a68d53

  Copy full SHA for 6a68d53

Commits on Nov 6, 2024

• Merge branch 'develop' into pd-2747-multiome-opossum

  ekiernan

  authored
  a51e6b1

  Copy full SHA for a51e6b1

• Updated outputs to reflect the csi index. Renamed the index from tbi to index

  khajoue2

  committed
  645883b

  Copy full SHA for 645883b

• resolved conflict

  khajoue2

  committed
  b66ddd8

  Copy full SHA for b66ddd8

• Update Multiome.wdl

  Show description for ea6c770
  khajoue2

  authored
  ea6c770

  Copy full SHA for ea6c770

• Update pipelines/skylab/atac/atac.wdl

  Show description for 0407007
  

  khajoue2

  and

  ekiernan

  authored
  0407007

  Copy full SHA for 0407007