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Add examples using public gs links from the broad-references-private sources #997

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@mr-c mr-c commented Jun 1, 2023

Redo of #473

@dsde-jenkins
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Can one of the admins verify this patch?

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@dsde-jenkins
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Can one of the admins verify this patch?

@mr-c mr-c changed the title Create examples using public gs link from the broad-references-private sources Add examples using public gs link from the broad-references-private sources Jun 1, 2023
@mr-c mr-c changed the title Add examples using public gs link from the broad-references-private sources Add examples using public gs links from the broad-references-private sources Jun 1, 2023
@nikellepetrillo
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Hi @mr-c,

If you are looking for public inputs for the ExomeGermlineSingleSample pipeline, you can find examples in this featured Terra workspace: https://app.terra.bio/#workspaces/warp-pipelines/Exome-Analysis-Pipeline

We can look into adding these Terra inputs as an example json in WARP.

Thanks,
Nikelle

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mr-c commented Jun 30, 2023

Hi @mr-c,

If you are looking for public inputs for the ExomeGermlineSingleSample pipeline, you can find examples in this featured Terra workspace: https://app.terra.bio/#workspaces/warp-pipelines/Exome-Analysis-Pipeline

Thanks, @nikellepetrillo ; I'm not a Terra user. This was for converting WDL to CWL and having publicly accessible test data.

We can look into adding these Terra inputs as an example json in WARP.

Sure. Also good to have the link here. Can you review and merge this PR?

@mr-c mr-c force-pushed the more_public_data branch from 4184591 to bbf273f Compare June 30, 2023 01:14
@aawdeh
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aawdeh commented Oct 5, 2023

Thank you for looking into this! We will further investigate this and get back to you.

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4 participants