Fixed live-coding bug

bxlab · Oct 11, 2024 · 5f7f150 · 5f7f150
1 parent 2402771
commit 5f7f150
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R b/assignments/lab/bulk_RNA-seq_part1/slides_asynchronous_or_livecoding_resources/Live_coding.R
@@ -67,7 +67,7 @@ ggplot(broadPcaData, aes(PC1, PC2, color=tissue, shape=rep)) +
   geom_point(size=5)
 
 # Convert into a matrix
-broadVstdata = as.matrix(assay(broadVstdata[sds>1,]))
+broadVstdata = as.matrix(assay(broadVstdata))
 
 # Find replicate means
 combined = broadVstdata[,seq(1, 9, 3)]