feat: first draft diagnostic report #767
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| name: validate-fhir-resources | |
| on: | |
| pull_request: | |
| branches: | |
| - master | |
| - beta | |
| push: | |
| branches: [master] | |
| permissions: | |
| contents: read | |
| jobs: | |
| extract-mapper-names: | |
| runs-on: ubuntu-22.04 | |
| outputs: | |
| mapper-names: ${{ steps.extract.outputs.mapper-names }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| persist-credentials: false | |
| - name: Find unique prefixes | |
| id: extract | |
| run: | | |
| PREFIXES=$(find src/test/java/snapshots/org/miracum/streams/ume/obdstofhir/mapper/mii/ -name "*.fhir.json" \ | |
| | awk -F'/' '{split($NF, parts, "\\."); print parts[1]}' | sort -u | jq -R . | jq -s -c .) | |
| echo "Extracted prefixes: $PREFIXES" | |
| echo "mapper-names=$PREFIXES" >> "$GITHUB_OUTPUT" | |
| validate-fhir-resource: | |
| runs-on: ubuntu-22.04 | |
| container: ghcr.io/miracum/ig-build-tools:v2.1.6@sha256:26bc1eaf0a259e8c16d0eeeb8622c7aecaa45d41e39f158696f9aec90b142596 | |
| needs: | |
| - extract-mapper-names | |
| strategy: | |
| matrix: | |
| mapper: ${{ fromJson(needs.extract-mapper-names.outputs.mapper-names) }} | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2 | |
| with: | |
| persist-credentials: false | |
| - name: Cache FHIR packages | |
| id: fhir-package-cache | |
| uses: actions/cache@1bd1e32a3bdc45362d1e726936510720a7c30a57 # v4.2.0 | |
| with: | |
| path: ~/.fhir/packages | |
| key: fhir-packages-${{ hashFiles('package.json') }} | |
| - name: Restore FHIR package dependencies | |
| run: | | |
| fhir restore | |
| - name: Validate generated FHIR resources | |
| continue-on-error: true | |
| run: | | |
| echo "Validating files for mapper: ${{ matrix.mapper }}" | |
| find src/test/java/snapshots/org/miracum/streams/ume/obdstofhir/mapper/mii/ \ | |
| -name "${{ matrix.mapper }}*.fhir.json" -print0 | \ | |
| xargs -0 -I {} sh -c 'echo " Validating: {}" && fhir validate --verbose --fail "{}"' |