3D peptide conformation prediction
- install: SPIDER3-Single_np.tgz or SPIDER3-Single_tf.tgz
- run impute_script_np.sh
- generating *.il files
- mkdir peptidepdb & copy everything into peptidepdb
- download : cys_rec.tar.bz2 ##ssbonds
- download : tinker bin: minimize dynamic protein & parameters
- gfortran -o read read.f90
- gfortran -o exermsf rmsd.f
- run pepptide3D.V2.sh
- predicitng files in 3D/
- rmsd values in rmsd/
If you have any questions, pls email to c00jsw00@gmail.com -->Dr. Yeng-Tseng Wang