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peptide3D

3D peptide conformation prediction

  1. install: SPIDER3-Single_np.tgz or SPIDER3-Single_tf.tgz
  2. run impute_script_np.sh
  3. generating *.il files
  4. mkdir peptidepdb & copy everything into peptidepdb
  5. download : cys_rec.tar.bz2 ##ssbonds
  6. download : tinker bin: minimize dynamic protein & parameters
  7. gfortran -o read read.f90
  8. gfortran -o exermsf rmsd.f
  9. run pepptide3D.V2.sh
  10. predicitng files in 3D/
  11. rmsd values in rmsd/

If you have any questions, pls email to c00jsw00@gmail.com -->Dr. Yeng-Tseng Wang

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3D peptide conformation prediction

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