switching to biblatex

.gitignore

@@ -18,8 +18,10 @@
 *.fdb_latexmk
 *.fls
 *.xbb
+*.bcf
+*.run.xml
 
 _*_.synctex.gz
 _*_.tex
 
-.#
+.#*

FormatAndDefsThesisExtra.tex

@@ -172,7 +172,35 @@
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % Bibliography
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\bibliographystyle{these}
+\usepackage[style=alphabetic,maxnames=99,maxcitenames=1,giveninits=false,uniquename=init,backref=true]{biblatex}
+% Make parenthical citations the default
+\renewcommand\cite{\parencite}
+
+\DeclareCiteCommand{\citet}
+  {\boolfalse{citetracker}%
+   \boolfalse{pagetracker}%
+   \usebibmacro{prenote}}
+  {\ifciteindex
+     {\indexnames{labelname}}
+     {}%
+   \printtext[bibhyperref]{\printnames{labelname}~[\printfield{year}]}}
+  {\multicitedelim}
+  {\usebibmacro{postnote}}
+
+\renewcommand*{\labelalphaothers}{}
+\DeclareLabelalphaTemplate{
+  \labelelement{
+    \field[final]{shorthand}
+    \field[names=1]{labelname}
+    \field{label}
+  }
+  \labelelement{
+    \literal{\addhighpenspace}
+  }
+  \labelelement{
+    \field{year}
+  }
+}
 
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 % Hyperreferences
@@ -188,11 +216,9 @@
 \definecolor{citecol}{rgb}{0,0,0}
 
 \ifpdf
- \usepackage[backref=page,pdfusetitle,pdfpagelabels=true]
-{hyperref}
+\usepackage[pdfusetitle,pdfpagelabels=true]{hyperref}
 \else
- \usepackage[backref=page,dvips,pdfusetitle,pdfpagelabels=true]
-{hyperref}
+\usepackage[dvips,pdfusetitle,pdfpagelabels=true]{hyperref}
 \fi
 
 \hypersetup

Introduction.tex

@@ -6,7 +6,7 @@ \chapter{Introduction}
 \begin{minipage}[b]{0.9\linewidth}
 \small
 \textbf{Foreword\,}
-This chapter needs a foreword. It is an \emph{in extenso} reproduction of~\cite{Ourselin:MICCAI:00}.
+This chapter needs a foreword. It is an \emph{in extenso} reproduction of~\cite{Ourselin:MICCAI:00}. In \citet{Ourselin:MICCAI:00}, we did great work.
 \end{minipage}
 \end{center}