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Use mappings from MRMAP #2

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@gaurav gaurav commented Apr 16, 2020

This PR will try to use the mappings from MRMAP to supplement the information from MRCONSO in mapping from one vocabulary to another. Given how complicated MRMAP is, this will probably take a while.

@gaurav gaurav changed the base branch from master to access-mrconso-via-sqlite April 16, 2020 17:51
gaurav added 5 commits May 12, 2020 22:40
A simple term mapper built around the NCI Metathesaurus. It can produce the entire known mapping, or only map a list of input terms. Most RRF files are loaded directly into memory, but since two critical files we need (MRCONSO and MRHIER) are particularly large, we load those into a local SQLite3 database and query them from there. It also includes support for matching via the parent term, i.e. when term X in source A has no mapping in source B, but X's parent term does.
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