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feat!: Add support for UnknownGeneElements #234

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e0ae571
Reorganize new models
jarbesfeld Jan 15, 2025
23a1644
Incorporate metadata classes into translators
jarbesfeld Jan 15, 2025
ac5a770
Merge branch 'main' into issue-224
jarbesfeld Jan 16, 2025
3d92180
Add class for JAFFA
jarbesfeld Jan 16, 2025
2a7fbf0
Add STAR-Fusion
jarbesfeld Jan 16, 2025
f52b36f
Store work
jarbesfeld Jan 16, 2025
cf1dafa
Add pydantic classes for remaining translators
jarbesfeld Jan 16, 2025
ee3b1e4
Add small changes to attributes based on jaffa column names
jarbesfeld Jan 16, 2025
3b718ed
Add initial work for extraction methods
jarbesfeld Jan 17, 2025
cb4d2c0
Add remaining extraction methods, change some attributes
jarbesfeld Jan 17, 2025
1e86017
Merge branch 'main' into issue-229
jarbesfeld Jan 23, 2025
ff8df52
Allow extra parameters to be supplied
jarbesfeld Jan 23, 2025
4fb55c6
Refactor extraction methods
jarbesfeld Jan 23, 2025
7da8e76
Store work
jarbesfeld Jan 23, 2025
3b2c5e7
Add fusion caller models tests
jarbesfeld Jan 23, 2025
8234e71
Move extraction methods into fusion caller classes
jarbesfeld Jan 23, 2025
91bd5bc
Rename file and remove commented out code
jarbesfeld Jan 23, 2025
3b7a50a
Add static and class methods
jarbesfeld Jan 24, 2025
4e00a59
Fix docstring
jarbesfeld Jan 24, 2025
a722022
Store latest changes
jarbesfeld Jan 24, 2025
3af2415
Remove fusion caller model tests
jarbesfeld Jan 24, 2025
270205b
Change docstrings, remove double loop
jarbesfeld Jan 27, 2025
ffe4641
Merge branch 'main' into issue-229
jarbesfeld Jan 27, 2025
15953ca
Store updates
jarbesfeld Jan 27, 2025
686eee9
Add support in remaining translators
jarbesfeld Jan 27, 2025
e114790
Merge branch 'main' into issue-233
jarbesfeld Jan 27, 2025
8814db6
Remove duplicate None statements, update function docstrings
jarbesfeld Jan 29, 2025
1bde7db
Refactor gene processing and change function signature
jarbesfeld Jan 29, 2025
e3a7c62
Access TranscriptSegmentElement directly in translator
jarbesfeld Jan 29, 2025
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