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7. Vignettes
Giulio Caravagna edited this page Sep 12, 2018
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RMarkdown vignettes that show REVOLVER, as well as implemented case studies.
You can contribute your vignettes ([email protected]).
Vignettes about the tool
- Plotting functions: this vignette shows all the possible plotting functions available in REVOLVER; these include methods to plot patients' data, models and fit, clustering, and confidence.
Analysis that appear in REVOLVER's original manuscript
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Colorectal adenomas and carcinomas from Cross et al.: analysis of n = 19 Colorectal adenomas/carcinomas from Cross et al.
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Lung cancers from the TRACERx cohort: analysis of n = 99 lung cancers available from the TRACERx consortium.
- Fits for all patients: one PDF each or in a unique PDF
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Validation of breast cancers groups computed from data by Yates et al: enrichment and survival analysis of n > 1700 breast cancers stratified by REVOLVER's clusters, originally computed from data by Yates et al.
- Fits for all patients: one PDF each or in a unique PDF