download input files for episode 09

carpentries-incubator · Aug 1, 2024 · 79bf5f6 · 79bf5f6
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diff --git a/episodes/01-setup.Rmd b/episodes/01-setup.Rmd
@@ -57,6 +57,18 @@ download.file(
     url = "https://raw.githubusercontent.com/Bioconductor/bioconductor-teaching/master/data/ActbOrf/actb_orfs.fasta", 
     destfile = "data/actb_orfs.fasta"
 )
+download.file(
+  url = "https://raw.githubusercontent.com/Bioconductor/bioconductor-teaching/devel/data/SummarizedExperiment/counts.csv",
+  destfile = "data/actb_orfs.fasta"
+)
+download.file(
+  url = "https://raw.githubusercontent.com/Bioconductor/bioconductor-teaching/devel/data/SummarizedExperiment/gene_metadata.csv",
+  destfile = "data/actb_orfs.fasta"
+)
+download.file(
+  url = "https://raw.githubusercontent.com/Bioconductor/bioconductor-teaching/devel/data/SummarizedExperiment/sample_metadata.csv",
+  destfile = "data/actb_orfs.fasta"
+)
 ```
 
 :::::::::::::::::::::::::::::::::::::::::  callout

diff --git a/episodes/09-summarizedexperiment.Rmd b/episodes/09-summarizedexperiment.Rmd
@@ -8,6 +8,7 @@ exercises: XX
 ---
 
 ```{r, echo=FALSE, purl=FALSE, message=FALSE}
+source("download_data.R")
 ```
 
 ::::::::::::::::::::::::::::::::::::::: objectives
-Original file line number
+Diff line change
@@ Expand Up / @@ -8,6 +8,7 @@ exercises: XX @@
     ---
     ```{r, echo=FALSE, purl=FALSE, message=FALSE}
+    source("download_data.R")
     ```
     ::::::::::::::::::::::::::::::::::::::: objectives
@@ Expand Down @@