Allow overview lessons #693
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master] | |
| pull_request: | |
| branches: [main, master] | |
| workflow_dispatch: | |
| name: test-coverage | |
| jobs: | |
| test-coverage: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RENV_PATHS_ROOT: ~/.local/share/renv | |
| OS_VERSION: 1 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: "Set up pandoc" | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: "Install sysreqs" | |
| id: run-apt | |
| shell: bash | |
| run: | | |
| sudo apt update || exit 0 | |
| curl https://carpentries.r-universe.dev/stats/sysdeps 2> /dev/null \ | |
| | jq -r '.headers[0] | select(. != null)' 2> /dev/null \ | |
| > ${{ runner.temp }}/sysdeps.txt | |
| if [[ `wc -l < ${{ runner.temp }}/sysdeps.txt` -gt 0 ]]; then | |
| echo 'sysdeps acquired' | |
| else | |
| echo 'fetching sysdeps from descriptions' | |
| curl https://carpentries.r-universe.dev/stats/descriptions \ | |
| | jq -r '._builder.sysdeps | .[].headers | select(. != null)' 2> /dev/null \ | |
| > ${{ runner.temp }}/sysdeps.txt | |
| fi | |
| if [[ `wc -l < ${{ runner.temp }}/sysdeps.txt` -eq 0 ]]; then | |
| echo "::warn::System dependencies could not be acquired. Builds may fail" | |
| exit 1 | |
| else | |
| echo "found sysdeps: $(cat ${{ runner.temp }}/sysdeps.txt)" | |
| fi | |
| printf "libxslt-dev\n" >> ${{ runner.temp }}/sysdeps.txt | |
| sudo xargs apt-get install --fix-missing -y < ${{ runner.temp }}/sysdeps.txt || echo "Not on Ubuntu" | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: coverage | |
| - name: Restore {renv} cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.RENV_PATHS_ROOT }} | |
| key: ${{ runner.os }}-${{ env.OS_VERSION }}-renv-${{ runner.r }}-${{ hashFiles('.github/workflows/R-CMD-check.yaml') }} | |
| restore-keys: | | |
| ${{ runner.os }}-${{ env.OS_VERSION }}-renv-${{ runner.r }}- | |
| - name: Prime {renv} Cache | |
| run: | | |
| renv::settings$snapshot.type("explicit") | |
| renv::init() | |
| system('rm -rf renv .Rprofile') | |
| system('git clean -fd -e .github') | |
| system('git restore .') | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: | | |
| covr::codecov( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | |
| ) | |
| shell: Rscript {0} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |