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# LolliPop | ||
LolliPop - a tool for Deconvolution for Wastewater Genomics | ||
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## Installation | ||
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We recommend installting the bioconda package: | ||
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```bash | ||
conda install lollipop | ||
``` | ||
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## Usage | ||
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From notebooks: | ||
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```python | ||
from lollipop import * | ||
``` | ||
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See [notebook WwSmoothingKernel.ipynb](RECOMBpaper/WwSmoothingKernel.ipynb) | ||
in directory [RECOMBpaper/](RECOMBpaper/) | ||
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Command lins: | ||
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...comming soon... |
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# Notebooks | ||
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This directory contains the Notebooks that have been used to generate the plots for the submission to Recomb 2003. | ||
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## Jupyter kernel | ||
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To install the `lollipop` kernel necessary for [notebook WwSmoothingKernel.ipynb](WwSmoothingKernel.ipynb), | ||
you can also use conda: | ||
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```bash | ||
conda env create -f conda_ipylollipop_env.yaml | ||
conda activate ipylollipop | ||
python -m ipykernel install --user --name=lollipop | ||
``` |