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Fix some filesystem bugs, added "A" option to ls
There were some filesystem bugs, mostly related to . and .., which have since been fixed. Down the line I'd like to figure out how to properly represent both . and .. as FileSystemNodes, but for now their behavior is hard-coded to be checked in getChildFile. The -A option has also been added, which allows for ls to show hidden directories, but not "." and "..". The -a option has been modified to now actually, correctly, show "." and "..".
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