Add support for Python 3.13 #24
Workflow file for this run
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| name: Test | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }} | |
| cancel-in-progress: true | |
| on: | |
| pull_request: | |
| paths-ignore: | |
| - 'docs/**' | |
| push: | |
| branches: | |
| - main | |
| release: | |
| types: | |
| - published | |
| jobs: | |
| style: | |
| name: Check style | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 2 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.12' | |
| - uses: pre-commit/[email protected] | |
| build_wheels: | |
| needs: style | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-15, macos-13] | |
| arch: [native] | |
| include: | |
| - os: ubuntu-22.04 | |
| arch: aarch64 | |
| fail-fast: false | |
| timeout-minutes: 15 # Linux ~1 min, Windows ~4 min, aarch64 emulated ~8 min with tests (~3 min without) | |
| name: cibuildwheel (${{ matrix.os }} ${{ matrix.arch }}) | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set wheel tests to be skipped on emulated archs on PRs | |
| run: | | |
| if [[ "${{ github.event_name }}" == "pull_request" ]] && [[ "${{ matrix.arch }}" == "aarch64" ]]; then | |
| echo "CIBW_TEST_SKIP=*" | tee -a $GITHUB_ENV | |
| fi | |
| shell: bash | |
| # For aarch64 support https://cibuildwheel.pypa.io/en/stable/faq/#emulation | |
| - uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: all | |
| if: runner.os == 'Linux' && matrix.arch == 'aarch64' | |
| - name: Build wheels and run tests | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ARCHS: ${{ matrix.arch }} | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: artifact-${{ matrix.os }}-${{ matrix.arch }} | |
| path: ./wheelhouse/*.whl | |
| test: | |
| needs: build_wheels | |
| strategy: | |
| matrix: | |
| os: [ubuntu-22.04, windows-2022, macos-15, macos-13] | |
| python-version: ['3.12'] | |
| include: | |
| - os: ubuntu-22.04 | |
| python-version: '3.13' | |
| fail-fast: false | |
| name: Test wheels (${{ matrix.os }} py${{ matrix.python-version }}) | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 5 | |
| defaults: | |
| run: | |
| shell: bash -eo pipefail {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: artifact-${{ matrix.os }}-native | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -al dist | |
| - name: Triage dependencies | |
| run: | | |
| if [[ "${{ matrix.python-version }}" != "3.13" ]]; then | |
| echo "PIP_EXTRA=wfdb numpy<2 numba pytest-error-for-skips" | tee -a $GITHUB_ENV | |
| echo "PYTEST_EXTRA=--error-for-skips" | tee -a $GITHUB_ENV | |
| fi | |
| - run: python -m pip install ./dist/*.whl pytest pytest-cov edfio $PIP_EXTRA --only-binary="numpy,numba,edfio" | |
| - run: pytest -rfEXs --cov=sleepecg --cov-report=xml --tb=short --cov-branch --color=yes $PYTEST_EXTRA tests/ | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| if: success() || failure() | |
| build_sdist: | |
| needs: style | |
| name: Build source distribution | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| name: Install Python | |
| with: | |
| python-version: 3.12 | |
| - name: Build sdist | |
| run: | | |
| set -eo pipefail | |
| python -m pip install build numpy | |
| python -m build --sdist | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: artifact-sdist | |
| path: dist/*.tar.gz | |
| check_wheels: | |
| needs: [build_wheels, build_sdist] | |
| name: Check wheels and source distribution | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: artifact-* | |
| merge-multiple: true | |
| path: dist | |
| - run: ls -al dist | |
| shell: bash | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.12 | |
| - run: python -m pip install twine | |
| - run: python -m twine check --strict dist/* | |
| upload-pypi: | |
| name: Upload to PyPI | |
| needs: [check_wheels, test] | |
| runs-on: ubuntu-latest | |
| if: github.event_name == 'release' | |
| steps: | |
| - uses: actions/download-artifact@v4 | |
| with: | |
| pattern: artifact-* | |
| merge-multiple: true | |
| path: dist | |
| - uses: pypa/[email protected] |