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Cellarium

Cellarium Lab, Data Sciences Platform, Broad Institute

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  1. cellarium-ml cellarium-ml Public

    Distributed single-cell data analysis.

    Jupyter Notebook 28 3

  2. SynapseCLR SynapseCLR Public

    A contrastive learning framework for 3D electron microscopy data

    Jupyter Notebook 11 1

  3. cellarium-cloud cellarium-cloud Public

    Cellarium Cloud Core Library

    Python 6 1

  4. CellMincer CellMincer Public

    CellMincer is a software package for self-supervised denoising of voltage imaging datasets

    Python 5

  5. cellarium-cas cellarium-cas Public

    Python client libraries for Cellarium Cloud Cell Annotation Service (CAS).

    Python 5 1

  6. Optosynth Optosynth Public

    Synthetic voltage image (Optopatch) data generator

    Jupyter Notebook 1

Repositories

Showing 10 of 12 repositories
  • cellarium-ml Public

    Distributed single-cell data analysis.

    cellarium-ai/cellarium-ml’s past year of commit activity
    Jupyter Notebook 28 BSD-3-Clause 3 46 (3 issues need help) 12 Updated Feb 15, 2025
  • cellarium-cloud Public

    Cellarium Cloud Core Library

    cellarium-ai/cellarium-cloud’s past year of commit activity
    Python 6 BSD-3-Clause 1 22 3 Updated Jan 9, 2025
  • public-xfer Public
    cellarium-ai/public-xfer’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 14, 2024
  • cellarium-workflows Public

    Repository with example how to run workflows in Vertex AI

    cellarium-ai/cellarium-workflows’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Nov 22, 2024
  • cellarium-cas Public

    Python client libraries for Cellarium Cloud Cell Annotation Service (CAS).

    cellarium-ai/cellarium-cas’s past year of commit activity
    Python 5 BSD-3-Clause 1 12 (1 issue needs help) 0 Updated Oct 31, 2024
  • CellMincer Public

    CellMincer is a software package for self-supervised denoising of voltage imaging datasets

    cellarium-ai/CellMincer’s past year of commit activity
    Python 5 BSD-3-Clause 0 7 2 Updated Jul 3, 2024
  • cellarium-neu-challenge Public
    cellarium-ai/cellarium-neu-challenge’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 26, 2024
  • CellBender Public

    CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

    cellarium-ai/CellBender’s past year of commit activity
    0 0 0 0 Updated Feb 2, 2023
  • anndata Public Forked from scverse/anndata

    Annotated data.

    cellarium-ai/anndata’s past year of commit activity
    Python 0 BSD-3-Clause 164 0 0 Updated Jan 31, 2023
  • SynapseCLR Public

    A contrastive learning framework for 3D electron microscopy data

    cellarium-ai/SynapseCLR’s past year of commit activity
    Jupyter Notebook 11 BSD-3-Clause 1 0 0 Updated Jan 17, 2023
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