This project serves as a toolkit to populate and fix experimental dataset in Radial Maze Experient.
The project is based on ezTrack[1], an open-source video analysis pipeline for the investigation of animal behavior.
On windows: open cmd and run path\MazeClerk\Venv\Scripts\activate.
table1: primary mice data (by 02-29-2020) table2: session records from 07-19-2019 to 02-29-2020
Pipeline_Individual.ipynb: notebook for individual analysis (location tracking, velocity calculation and arm retrieval performance) Pipeline_BatchProcess.ipynb: not tested yet PerformanceAnalysis.ipynb: notebook for group analysis
gui.py: run data collection gui LocationTracking_Functions.py and VelocityAndArmRetrieval_Functions.py: define functions for location tracking and individual analysis pipeline FreezeAnalysis_Functions.py: not used in individual tracking TrialDataAutofill_Functions.py: not completed
[1]Pennington, Z.T., Dong, Z., Feng, Y. et al. ezTrack: An open-source video analysis pipeline for the investigation of animal behavior. Sci Rep 9, 19979 (2019). https://doi.org/10.1038/s41598-019-56408-9