v0.20

As in all recent releases, Jannovar is best installed through Maven Central.
Alternatively you can directly download the compiled jannovar-cli-0.20.jar.

all

• Change email/organisations in master pom

jannovar-core

• GenotypeCalls.getGenotypeForSample() returns a "no-call" genotype now instead of null

jannovar-htsjdk

• fix to annotation with compatible mode of inheritance (#289)
• update to htsjdk 2.8.1

jannovar-cli

• removing requirement for proper contig contig lines in gene-wise gene annotation
• fixing NPE in the case of no contig lines
• improving error message on samples in VCF file that are not in pedigree
• fix to annotation with compatible mode of inheritance (#289)
• better overview on CLI help message
• if ref-fasta is not set properly a nicer error message will be shown.

jannovar-vardbs

• Fixing bug with problems of unmodifieable Attributes.
• Including Hom/Het/Hemi counds of ExAC (#295)
• update to htsjdk 2.8.1