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  1. flu-crew/Flumina flu-crew/Flumina Public

    A pipeline for the analysis of Illumina sequence data from Influenza viruses

    R 4 2

  2. FrogCap-Sequence-Capture FrogCap-Sequence-Capture Public

    Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2021) sequence capture probe set for all frogs

    R 9 1

  3. PhyloProcessR PhyloProcessR Public

    R package for processing high-throughput sequencing data from targeted sequence capture for phylogenomic analyses

    R 3

  4. MitoTrawlR MitoTrawlR Public

    An R package for processing high-throughput sequence data from raw reads to alignments from mitochondrial genomes sequenced as by-catch

    R 1 1

  5. PhyloConfigR PhyloConfigR Public

    Configures various phylogenetic software input and output parsing

    R 1

  6. flu-crew/dairy-cattle-hpai-2024 flu-crew/dairy-cattle-hpai-2024 Public

    code to reproduce analysis in Nguyen et al.

    R 3