Adaptive Adams

.github/workflows/autopush.yml

@@ -0,0 +1,21 @@
+name: Gitlab mirror
+on:
+    push:
+        branches:
+        - main
+
+jobs:
+    autopush:
+        name: Automatic push to gitlab.tiker.net
+        runs-on: ubuntu-latest
+        steps:
+        -   uses: actions/checkout@v2
+        -   run: |
+                mkdir ~/.ssh && echo -e "Host gitlab.tiker.net\n\tStrictHostKeyChecking no\n" >> ~/.ssh/config
+                eval $(ssh-agent) && echo "$GITLAB_AUTOPUSH_KEY" | ssh-add -
+                git fetch --unshallow
+                git push "[email protected]:inducer/$(basename $GITHUB_REPOSITORY).git"  main
+            env:
+                GITLAB_AUTOPUSH_KEY: ${{ secrets.GITLAB_AUTOPUSH_KEY }}
+
+# vim: sw=4

.github/workflows/ci.yml

@@ -2,7 +2,7 @@ name: CI
 on:
     push:
         branches:
-        - master
+        - main
     pull_request:
         paths-ignore:
         - 'doc/*.rst'
@@ -18,10 +18,11 @@ jobs:
         -
             uses: actions/setup-python@v1
             with:
-                python-version: '3.x'
+                # matches compat target in setup.py
+                python-version: '3.6'
         -   name: "Main Script"
             run: |
-                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/prepare-and-run-flake8.sh
+                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/prepare-and-run-flake8.sh
                 . ./prepare-and-run-flake8.sh "$(basename $GITHUB_REPOSITORY)" test examples
 
     pylint:
@@ -35,15 +36,15 @@ jobs:
                 python-version: '3.x'
         -   name: "Main Script"
             run: |
-                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/prepare-and-run-pylint.sh
+                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/prepare-and-run-pylint.sh
                 . ./prepare-and-run-pylint.sh "$(basename $GITHUB_REPOSITORY)" test examples
 
     pytest:
         name: Pytest on Py${{ matrix.python-version }}
         runs-on: ubuntu-latest
         strategy:
             matrix:
-                python-version: [3.6, 3.7, 3.8]
+                python-version: ["3.6", "3.8", "3.x"]
         steps:
         -   uses: actions/checkout@v2
         -
@@ -56,15 +57,33 @@ jobs:
                 sudo apt update
                 sudo apt install gfortran-7 liblapack-dev libblas-dev
                 sudo ln -sf /usr/bin/gfortran-7 /usr/bin/gfortran
-                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/build-and-test-py-project.sh
+                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/build-and-test-py-project.sh
                 . ./build-and-test-py-project.sh
 
+    pytest_conda:
+        name: Pytest Conda
+        runs-on: ubuntu-latest
+        steps:
+        -   uses: actions/checkout@v2
+        -   name: "Main Script"
+            run: |
+                CONDA_ENVIRONMENT=.test-conda-env-py3.yml
+                curl -L -O -k https://tiker.net/ci-support-v0
+                . ./ci-support-v0
+                build_py_project_in_conda_env
+
+                sudo apt update
+                sudo apt install gfortran-7 liblapack-dev libblas-dev
+                sudo ln -sf /usr/bin/gfortran-7 /usr/bin/gfortran
+
+                test_py_project
+
     examples:
         name: Examples on Py${{ matrix.python-version }}
         runs-on: ubuntu-latest
         strategy:
             matrix:
-                python-version: [3.6, 3.7, 3.8]
+                python-version: ["3.6", "3.8", "3.x"]
         steps:
         -   uses: actions/checkout@v2
         -
@@ -74,12 +93,32 @@ jobs:
         -   name: "Main Script"
             run: |
                 EXTRA_INSTALL="numpy matplotlib scipy"
+
                 sudo apt update
                 sudo apt install gfortran-7 liblapack-dev libblas-dev
                 sudo ln -sf /usr/bin/gfortran-7 /usr/bin/gfortran
-                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/build-py-project-and-run-examples.sh
+
+                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/build-py-project-and-run-examples.sh
                 . ./build-py-project-and-run-examples.sh
 
+    examples_conda:
+        name: Examples Conda
+        runs-on: ubuntu-latest
+        steps:
+        -   uses: actions/checkout@v2
+        -   name: "Main Script"
+            run: |
+                CONDA_ENVIRONMENT=.test-conda-env-py3.yml
+                curl -L -O -k https://tiker.net/ci-support-v0
+                . ./ci-support-v0
+                build_py_project_in_conda_env
+
+                sudo apt update
+                sudo apt install gfortran-7 liblapack-dev libblas-dev
+                sudo ln -sf /usr/bin/gfortran-7 /usr/bin/gfortran
+
+                run_examples
+
     docs:
         name: Documentation
         runs-on: ubuntu-latest
@@ -92,7 +131,7 @@ jobs:
         -   name: "Main Script"
             run: |
                 EXTRA_INSTALL="numpy"
-                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/ci-support.sh
+                curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/ci-support.sh
                 . ci-support.sh
                 build_py_project_in_venv
                 build_docs

.gitlab-ci.yml

@@ -2,7 +2,7 @@ Python 3:
   script:
   - py_version=3
   - EXTRA_INSTALL="numpy scipy"
-  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/build-and-test-py-project.sh
+  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/build-and-test-py-project.sh
   - ". ./build-and-test-py-project.sh"
   tags:
   - python3
@@ -17,7 +17,7 @@ Python 3 Examples:
   script:
   - py_version=3
   - EXTRA_INSTALL="numpy scipy matplotlib"
-  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/build-py-project-and-run-examples.sh
+  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/build-py-project-and-run-examples.sh
   - ". ./build-py-project-and-run-examples.sh"
   tags:
   - python3
@@ -31,7 +31,7 @@ Pylint:
   script: |
     export PY_EXE=python3
     EXTRA_INSTALL="numpy scipy"
-    curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/prepare-and-run-pylint.sh
+    curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/prepare-and-run-pylint.sh
     . ./prepare-and-run-pylint.sh "$CI_PROJECT_NAME" test examples
   tags:
   - python3
@@ -41,14 +41,14 @@ Pylint:
 Documentation:
   script:
   - EXTRA_INSTALL="numpy"
-  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/build-docs.sh
+  - curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/build-docs.sh
   - ". ./build-docs.sh"
   tags:
   - python3
 
 Flake8:
   script: |
-    curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/master/prepare-and-run-flake8.sh
+    curl -L -O -k https://gitlab.tiker.net/inducer/ci-support/raw/main/prepare-and-run-flake8.sh
     . ./prepare-and-run-flake8.sh "$CI_PROJECT_NAME" test examples
   tags:
   - python3

.test-conda-env-py3.yml

@@ -0,0 +1,13 @@
+name: test-conda-env
+channels:
+- conda-forge
+- nodefaults
+
+dependencies:
+- python=3
+- git
+- numpy
+- scipy
+- matplotlib-base
+
+- pip

MANIFEST.in

@@ -0,0 +1,11 @@
+recursive-include examples *.py
+
+include test/*.f90
+include test/conftest.py
+include test/utils.py
+include test/*_test_systems.py
+
+include doc/*.rst
+include doc/conf.py
+include doc/Makefile
+include doc/make.bat

README.rst

@@ -1,12 +1,12 @@
 leap: Descriptive Time Integration with Flexbile Multi-Rate Algorithms
 ======================================================================
 
-.. image:: https://gitlab.tiker.net/inducer/leap/badges/master/pipeline.svg
+.. image:: https://gitlab.tiker.net/inducer/leap/badges/main/pipeline.svg
     :alt: Gitlab Build Status
-    :target: https://gitlab.tiker.net/inducer/leap/commits/master
-.. image:: https://github.com/inducer/leap/workflows/CI/badge.svg?branch=master&event=push
+    :target: https://gitlab.tiker.net/inducer/leap/commits/main
+.. image:: https://github.com/inducer/leap/workflows/CI/badge.svg?branch=main&event=push
     :alt: Github Build Status
-    :target: https://github.com/inducer/leap/actions?query=branch%3Amaster+workflow%3ACI+event%3Apush
+    :target: https://github.com/inducer/leap/actions?query=branch%3Amain+workflow%3ACI+event%3Apush
 .. image:: https://badge.fury.io/py/leap.png
     :alt: Python Package Index Release Page
     :target: https://pypi.org/project/leap/