Merge pull request #1454 from cmu-delphi/release/delphi-epidata-4.1.22

Release Delphi Epidata 4.1.22
cmu-delphi · May 29, 2024 · 534beed · 534beed
2 parents 024a5a3 + 20bf8e2
commit 534beed
Showing 12 changed files with 1,188 additions and 477 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 4.1.21
+current_version = 4.1.22
 commit = False
 tag = False
 

diff --git a/dev/local/setup.cfg b/dev/local/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = Delphi Development
-version = 4.1.21
+version = 4.1.22
 
 [options]
 packages =

diff --git a/docs/symptom-survey/publications.md b/docs/symptom-survey/publications.md
@@ -26,6 +26,10 @@ Pandemic"](https://www.pnas.org/topic/548) in *PNAS*:
 
 Research publications using the survey data include:
 
+- Perofsky, A.C., Hansen, C.L., Burstein, R. et al (2024). [Impacts of human
+  mobility on the citywide transmission dynamics of 18 respiratory viruses
+  in pre- and post-COVID-19 pandemic years](https://doi.org/10.1038/s41467-024-48528-2).
+  *Nature Communications* 15, 4164.
 - Z. Yang, R. Krishnan, and B. Li (2024). [The interplay between individual
   mobility, health risk, and economic choice: A holistic model for COVID-19
   policy intervention](https://doi.org/10.1287/ijds.2023.0013). *INFORMS

diff --git a/requirements.api.txt b/requirements.api.txt
@@ -10,7 +10,7 @@ pandas==1.2.3
 python-dotenv==0.15.0
 pyyaml
 redis==3.5.3
-requests==2.31.0
+requests==2.32.0
 scipy==1.10.0
 sentry-sdk[flask]
 SQLAlchemy==1.4.40

diff --git a/requirements.dev.txt b/requirements.dev.txt
@@ -13,7 +13,6 @@ mypy>=0.790
 mysql-connector==2.2.9
 numpy==1.22.4
 pycountry==22.3.5
-pymysql==1.0.2
 pytest==7.2.0
 pytest-check==1.3.0
 sas7bdat==2.2.3

diff --git a/src/client/delphi_epidata.R b/src/client/delphi_epidata.R
@@ -15,7 +15,7 @@ Epidata <- (function() {
   # API base url
   BASE_URL <- getOption('epidata.url', default = 'https://api.delphi.cmu.edu/epidata/')
 
-  client_version <- '4.1.21'
+  client_version <- '4.1.22'
 
   auth <- getOption("epidata.auth", default = NA)
 

diff --git a/src/client/delphi_epidata.js b/src/client/delphi_epidata.js
@@ -22,7 +22,7 @@
   }
 })(this, function (exports, fetchImpl, jQuery) {
   const BASE_URL = "https://api.delphi.cmu.edu/epidata/";
-  const client_version = "4.1.21";
+  const client_version = "4.1.22";
 
   // Helper function to cast values and/or ranges to strings
   function _listitem(value) {

diff --git a/src/client/delphi_epidata.py b/src/client/delphi_epidata.py
@@ -18,7 +18,7 @@
 
 from delphi.epidata.common.logger import get_structured_logger
 
-__version__ = "4.1.21"
+__version__ = "4.1.22"
 
 _HEADERS = {"user-agent": "delphi_epidata/" + __version__ + " (Python)"}
 

diff --git a/src/client/packaging/npm/package.json b/src/client/packaging/npm/package.json
@@ -2,7 +2,7 @@
   "name": "delphi_epidata",
   "description": "Delphi Epidata API Client",
   "authors": "Delphi Group",
-  "version": "4.1.21",
+  "version": "4.1.22",
   "license": "MIT",
   "homepage": "https://github.com/cmu-delphi/delphi-epidata",
   "bugs": {

diff --git a/src/client/packaging/pypi/setup.py b/src/client/packaging/pypi/setup.py
@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="delphi_epidata",
-    version="4.1.21",
+    version="4.1.22",
     author="David Farrow",
     author_email="dfarrow0@gmail.com",
     description="A programmatic interface to Delphi's Epidata API.",

diff --git a/src/server/_config.py b/src/server/_config.py
@@ -7,7 +7,7 @@
 
 load_dotenv()
 
-VERSION = "4.1.21"
+VERSION = "4.1.22"
 
 MAX_RESULTS = int(10e6)
 MAX_COMPATIBILITY_RESULTS = int(3650)

diff --git a/src/server/endpoints/covidcast_utils/db_signals.csv b/src/server/endpoints/covidcast_utils/db_signals.csv