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[DO NOT MERGE] Tox reports #133

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[DO NOT MERGE] Tox reports #133

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b75db29
Add toxicology report data
edlu77 Apr 7, 2023
3ac39ea
Modify SQL
edlu77 Apr 12, 2023
ae6098c
Clean up SQL and add age
edlu77 Apr 17, 2023
d43c2c9
Add all tox reports data to data distributions page
edlu77 Apr 19, 2023
4429584
filter data for entries with valid age data
edlu77 Apr 25, 2023
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1 change: 1 addition & 0 deletions .gitignore
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Expand Up @@ -3,3 +3,4 @@
/raw-data
container.sif
website/debug.log
job.sh
1 change: 1 addition & 0 deletions data-processor/scripts/02-create-raw-db.sql.sh
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Expand Up @@ -22,5 +22,6 @@ sqlite3 $DB << EOF
.mode csv
.import "${DATA_SOURCES}/Marion_OD_Dataset-6_20_2019.csv" od_deaths_raw
.import "${DATA_SOURCES}/Marion_OD_Jail_Weekly--06252019.csv" od_incarcerations_weekly_raw
.import "${DATA_SOURCES}/2023_Tox_Reports.csv" tox_reports_raw
.quit
EOF
3 changes: 2 additions & 1 deletion data-processor/src/a2agc/schema.py
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Expand Up @@ -20,7 +20,8 @@ def load(xml: str) -> Schema:
'medications': 'PHYS_TIME',
'ems_incidents': 'PCRDateTime',
'incarcerations': 'BOOKING_DATE',
'encounters': 'ADMIT_TIME'
'encounters': 'ADMIT_TIME',
'tox_reports': 'DOD'
}

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